GgaINT0054690 @ galGal4
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22964838-22965088:-
Coord C1 exon
chr5:22965006-22965088
Coord A exon
chr5:22964899-22965005
Coord C2 exon
chr5:22964838-22964898
Length
107 bp
Sequences
Splice sites
5' ss Seq
GGCGTGAGT
5' ss Score
7
3' ss Seq
ACCCTCCTTGCTCCCTGCAGGCT
3' ss Score
10.91
Exon sequences
Seq C1 exon
GGAGCCAAGATAATCCAGTCCTTCATGTGGTATCTCAACCCACGGCAAGTTTTTGACCTCAGCCAGGGTGGTCCCAAGGAGGC
Seq A exon
GTGAGTACTGTTTGCTGTATTTCAGTTTACCCCTGCAGTAACACCTTTTCCTGGCTGCAGTCTCAGTGTCTGTGCCCTCCCGTCCTGACCCTCCTTGCTCCCTGCAG
Seq C2 exon
GCTGGAGTTGTACCGCAAGGTCCACAACCTACGGATCCTGGCATGTGGGGGAGATGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(21.6=100)
A:
NA
C2:
PF0078119=DAGK_cat=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCAAGATAATCCAGTCCT
R:
ATCTCCCCCACATGCCAGG
Band lengths:
138-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]