BtaINT0048718 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77246650-77246893:+
Coord C1 exon
chr15:77246650-77246782
Coord A exon
chr15:77246783-77246854
Coord C2 exon
chr15:77246855-77246893
Length
72 bp
Sequences
Splice sites
5' ss Seq
CATGTCAGA
5' ss Score
-2.16
3' ss Seq
ACCCCGTCACATCTGCTCTGTTT
3' ss Score
-3.72
Exon sequences
Seq C1 exon
CCTGTCACATCTCATGTCACCCTGTCATTTCATGTCATCTTGTCACATCCTGTCACCCTGTCACCTCAAGTCGTTGTCACATCTCATCCTGTTACATCATCACATCTCGTCACGTCACCCTGCCACATCTCAT
Seq A exon
GTCAGATCTCATCCTGTCACACCTCATGTCACCCATCACATCTCATTATGTCACCCCGTCACATCTGCTCTG
Seq C2 exon
TTTGCAGGTCACTGCCAGGGGACGCTGCGCCCCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(5.5=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCACATCTCATGTCACCC
R:
GTCCCCTGGCAGTGACCT
Band lengths:
156-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development