RnoINT0047108 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80846332-80847213:-
Coord C1 exon
chr3:80847074-80847213
Coord A exon
chr3:80846364-80847073
Coord C2 exon
chr3:80846332-80846363
Length
710 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CACCCCGATTCTGTTTGCAGGTC
3' ss Score
9.97
Exon sequences
Seq C1 exon
GAGCACCTCAACTATGTGACGGAGATTGCCCAGGATGAGATTTATATCCTAGACCCAGAGCTGCTGGGTGCATCAGCCCGACCTGACCTCCCTACCCCTACCTCCCCGCTCCCTGCCTCCCCCTGCTCCCCTACACCCGG
Seq A exon
GTGAGTCCCAGAGCCCCAGAGCCCCCCTAGCCACCTCTCCCCTGGCTTTAAATCCTGTCTGCTGGCTGCAGGCATGGAATTTCCACCAGCAGGAGCACTTAGGAGCGCCAGACTCAGTCCCTCTGCCATCATGCCTCCCACCATCAGGAGCTCTACCCCCACCCCTGCATTCCTGCCTCCAAGCCTGAAAGTACAAGTCCAAACAGGCCACTCCCCAGCCTAGAACCCTCTTCCTAGAAGCTCTTCCATTCCGGGCCTCTCTGAGCCCAGCAGTTTTCCTTGTCTGTTACCACAGTGCCTCCGCCCAGGCTCCTTGGGGTCCCAGGCATCCTCTGGACTTTCGCCCTTACAGTCTCAGACACCCTACCCCCAGCCCATCTTAGCTTGGCTTTTCCCTCTCAGAAGGATCTTTTCCAGGCATGCCACCTGAAGGTTGGAAAGTGTCCACCGCTGCTTGGTCACACTGCCCCGTTGTTCTGTTTAATAGCACTTCCAAATTTCTTATTTATCGGTTGGCTTGTATCTGAGCTAGGACATGAGCCCCACAAGGCCAAGGTCTCCATCCATCTGGCTCCCTGCTTGTACCCCACAGTGTGCGATGCATAGTAGGCACTCTAAACTTGAAAAAATGAAGGCCACCATGGTTGGTGCCAGGGAAGGAGGTCCGCTGGGCTGAACTGGGTCTCATCTCACCCCGATTCTGTTTGCAG
Seq C2 exon
GTCACTGCAGGGGGATGCCGCACTGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]