GgaINT0054704 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25811946-25812698:-
Coord C1 exon
chr5:25812508-25812698
Coord A exon
chr5:25811978-25812507
Coord C2 exon
chr5:25811946-25811977
Length
530 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTTCTCTTCTTCTCTTCCAGTGC
3' ss Score
11.81
Exon sequences
Seq C1 exon
GAGCACCTCAACTATGTGACAGAGATCTCTCAGGATGAGCTCTATGTACTGGACCCAGAGCTGGTGATCACCCAGACCGTAGGCACATCTCCTGCCATGCCTGATCTTGTTGACTCATCTGCCACACCTCCTGGGCACCACTTTGCTTTCCCATCCTCTTCTTCCTCTCCACCCTGCTCTCCTGCCCCCAG
Seq A exon
GTGAGTCTGCAGTGGGAGGAAATGGGGTGCTGGGCCTCAGGAAGGATGAACAGCAATGGGAAATCCGTGGTTGGCTTTGCAGCTTTGATCCCTAGGCTGGATTGCAGAGGGGATCCCAGGAATTGAATAAGAATCCACTGCCAAATTAGAGCAAGTGGGTGGGATGCTGTCCTGTCATCCCTGCTTCATTGCTGGCTGTGCTGAAGGCAGTGGAGCATCACAGTGGAGACTCAGCCGTGGGGCCAAGCTCCAGCACACGGTCTGTGCACGTGGGTCAGGCCAGGCTCAGGTGTGGGTGCTGAGAGCAGCAGTGGAAATGGGAGTGGGGCTGGGAAAGAACCCAGCTCAGGGAAGAAGCAGATGGCATGGTCAGAGGGTAGCTGATCCTTTGGCCTTCTTCTTCTGCTGTCTGGAGAAGTGCCACAGGTAGGCATCTCCGCAGCTGTCCCTCCACTCACCACGTGCGCCTTTCAGGCAGCGTGCTGCCCAGGCTGGCAGGGTTAGTTACACCTTCTCTTCTTCTCTTCCAG
Seq C2 exon
TGCTGACGCTGAGCTCTGCCTCCCGCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.547 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(13.7=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACCTCAACTATGTGACAGA
R:
GGAGGCAGAGCTCAGCGTC
Band lengths:
214-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]