BtaINT0049311 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29393900-29394846:-
Coord C1 exon
chr5:29394732-29394846
Coord A exon
chr5:29394040-29394731
Coord C2 exon
chr5:29393900-29394039
Length
692 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCG
5' ss Score
9.18
3' ss Seq
TAAGTTTATTTTGTCTTCAGACC
3' ss Score
6.82
Exon sequences
Seq C1 exon
GGTCTGTGTCATCCTGTGATGCCTTCCTGAGTCTGTTCCAAAGCCATGGTCTGAAACCTGAGGCCATCTGTCCATGTGCTACTTCTGCCGAAGCCATGACTGTCGCAATCCGCAG
Seq A exon
GTATCGTTCAGAATGTTGGTGCTCTTGATGGATGTTATATCTCTGATCAAACGTGCAGAGTTGACTGGGTGGTGACAAAGGGGTGAGGTCTAATTTTCTGCTTCATAAGCCTGAAAATGAAGATGACTTTGTAAAGCAGTTTGAAGCATCTCATTCATTATTCCTACTATTGCCCTAAGTGTAACTAGGAAACTGAAATTTTATTTCAGCTGTTCTTATCTTCTATTTGTGAATTTAGTTCTTTTTCTCTCTTCAGAATCCTTAGTATCTTAGACAAGAAATGTACTTGATCATAGCTTACACGTGGATACTACCTGTACATGTAGTACACTCAGGCCAATATGTTCTTTTAGTAAAACTATTTATTTATTTATTATTTGGCAGCAGAAGGTCTCAGTTGTGGCAAGTGGAATCTAGTTCCCTGACCAAGGATTGAACCTATGCCCCCTGCATTGGGAGCATGAATCTTAACCACTGGACCACTAGGGAAGTCCTCAAGCCAATATATTCTTAACAACCAATTAAGTTTTACTTTTCCCCCATGCTTTGCAAGTATTGGCAGATTTTTAGTAGAAAAAATGAGGATTTTTGTTTGTGTGGTAGCCAAAGGAAATTTTTCTTTCTTCCATGTTCATACTTTTCTCTTAATAGCTTTTAATTTGACAAATTTGATAAGTTTATTTTGTCTTCAG
Seq C2 exon
ACCTGGAGTTCCAGGGGCCCCTTTGCCAGGAAGAGCCATTCTCTCCATGAATGGATTGAGCTATGGGGTAATACGGGTCAACACTGAAGATAAAAATTCAGCACTGACTGTTCAGGATGTGGGCCATGTGATGCCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246:ENSBTAT00000006902:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGTCATCCTGTGATGCC
R:
CATCACATGGCCCACATCCTG
Band lengths:
246-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]