MmuINT0049576 @ mm9
Intron Retention
Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100003648-100004997:+
Coord C1 exon
chr15:100003648-100003762
Coord A exon
chr15:100003763-100004857
Coord C2 exon
chr15:100004858-100004997
Length
1095 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TTTTCTTTTTCCCATTTTAGGCC
3' ss Score
12.91
Exon sequences
Seq C1 exon
GGTCTGTGTCGTCCTGTGATGCTTTCCTGAGTCTCTTCCAAAGCCACGGACTGAAACCTGAGGCCATCTGTCCATGTGCCACATCTGCAGAGGCCATGACTGTAGCCATCCGAAG
Seq A exon
GTACTGTTTTCGATCAGGGTTCTCTTGATAGTCTGTCACAGCCTGGGTGAGATGTGAGAGAGGACTTAACTGGTTTTCTGCTTTCTAAACCTAAAAGTAAAATTGCTGAGCAGTCAGTCGTCTCAGGTGTCTCGGTAATACCTCTTCTCGACAGAAGTGCACCTAGAATCTGACAGCTAAGTTTAATTATTCTTATCTCATATTTGTGAGGCACTGTATTCTTCAGAACCCTTTGTGTCTTAAATTAGAAATGATCAGCCAATCATACCTCAGATATGACGATCTATACCTAAACCTTTATTAGTACATACTAGCATATTTCTTTCCTCTTTGCTTTTTTCCCTTGTTAAAGAGAATTGTCTGTGTTAGTCTGTGGACACACAGAGCACGGTGAGAGGTGCTCCTGTGAAGGTCAGAAGAGAGGGTTGGCTGTCCTGTTTTGTCCCTGCTGCCTATTCCCCTGAGGTGCGGCTCTCACTGAGGCTTGCATCTTGGCTAGGCTGCAAGCTAACCAGTCCTCGAGACCCCTGGTCCTTGCAGCCTTGTTCTCAGGCTATAGCATTTGGGGGGTTCCCAGCTTGTTTTATGGGCACTGGGACCCACTCTGGTTCTCAGGATTTTGGAGCCCATGCTCCTCATTGCTGAGCATCTCCAGCCCTGCTCTCCCACTTTCCTTTCCTTTCCTTTCCTTTCCTTTTCTTTCCTTTTTTCTTTTCTTGAGGGACAAGAGTCTCACTATGTAGTCCAGGTTGGCCTCAGATTTGCCCTCTGCCTCTGCCTCAGCCTCTCAAGGACTAGATTGCAGCATGAGCCACCATGCCTGGCTTTTTGTTGTTAATTTCTTCGGAATGTACTTCTGTGCTGGTGTGTGTGTGAGGTGTGTGGAGGTCAGAGGACAACCTGGAGGGAGTTGATTTTCTCCTTTTGCCACGTGGGCCTGGGAATGAAACTCAGGTCATCAGGTTTGCATGGCAGTTGTAACTGAGCTGTCTTCTCAGCCTTCCGAGTTTGCTTCTACTCATCTGGTTGTTTATACTTATTCTTGTTTGTATAGATGTGACTTGATGGTTTGTTTTTTTCTTTTTCCCATTTTAG
Seq C2 exon
GCCTGGGGTTCCAGGGGCTCCTTTGCCAGGAAGAGCCATTCTCTCAATGAATGGACTGAGCTATGGGGTCATACGGGTCAATACTGAGGATAAAAATTCAGCACTGACAGTTCAGGATGTGGGACATGTGATGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-Dip2b:NM_001159361:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGTCGTCCTGTGATGC
R:
CTCCAGGCATCACATGTCCCA
Band lengths:
254-1349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: