DreINT0057196 @ danRer10
Intron Retention
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27453619-27453974:-
Coord C1 exon
chr23:27453860-27453974
Coord A exon
chr23:27453759-27453859
Coord C2 exon
chr23:27453619-27453758
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TTGTCTCTCTGTGTGTTTAGGCC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GGTCTGTTTCTTCATGTGACGCCTTCCTGAACGTGTTTCAGTCGCATGGGCTGAAACCCGAGATGATCTGCCCCTGTGCTTCCTCTCCTGAGGCCATGACAGTGGCCATCCGCAG
Seq A exon
GTACCTGCATGTAATCTTCTGGAGATGTGCAGTTTTTTATTGCACACTTAAGTCTGTAGATGTGTTTTTCCCCCTATAAAGTTGTCTCTCTGTGTGTTTAG
Seq C2 exon
GCCTGGTGCTCCCGGCACTCCACTTCCTGCCAGGGCCATTCTGTCAATGGCAGGACTCAGTCACGGGGTGATTCGGGTCAACACGGAGGATAAGAACTCTGCCCTCACTGTGCAAGATGTAGGACATGTCATGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350:ENSDART00000019521:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTGACGCCTTCCTGAAC
R:
TCCAGGCATGACATGTCCTACA
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]