BtaINT0049319 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29374626-29374954:-
Coord C1 exon
chr5:29374845-29374954
Coord A exon
chr5:29374707-29374844
Coord C2 exon
chr5:29374626-29374706
Length
138 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTCCTGCCTTATGATTTCAGCAC
3' ss Score
6.5
Exon sequences
Seq C1 exon
GTGTAGGCCCTGCTTCTGTGATGGTTGGGAATCTGGTTGCAGGAAAACGCATAGCACAAGCTGCAGGAAGGGATCTCGGGCAAATTGAAGAGAATGATTTAGTGAGGAAG
Seq A exon
GTAAGTGTTCCAGAAATGTTGACTTTTATAGACAAGTCAAGGACAGAACCTAGGCTTCAGATAACAGATGGGAGATGCATTGTCCAGCTTTTTAAAAGTTGCTGACCCTGATTCTTTTTTCCTGCCTTATGATTTCAG
Seq C2 exon
CACCAGTTTCTGGCGGAGATTTTACAGTGGCGAGCCCAGGCAACTCCTGATCATGTCCTCTTCATGTTGTTAAATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246:ENSBTAT00000006902:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(4.0=70.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGGCCCTGCTTCTGTGAT
R:
GGCATTTAACAACATGAAGAGGACA
Band lengths:
187-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]