MmuINT0049584 @ mm10
Intron Retention
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100190032-100190336:+
Coord C1 exon
chr15:100190032-100190141
Coord A exon
chr15:100190142-100190255
Coord C2 exon
chr15:100190256-100190336
Length
114 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTTCTGCGTTGTGATTTTAGCAC
3' ss Score
6.48
Exon sequences
Seq C1 exon
GTGTAGGCCCTGCTTCTGTGATGGTTGGGAATCTGGTTGCTGGTAAACGCATAGCACAGGCTGCCGGAAGGGACCTGGGCCAAATAGAAGAGAATGACCTGGTGAGGAAG
Seq A exon
GTAAGCCCCATTCGGCCAGGCTCGTCCCTGTGAACACAGAGTGCAATGGGAACTATTACATGAATCCTTGAAACTTGCTGACCCTGAGTCCTTTCTTCTGCGTTGTGATTTTAG
Seq C2 exon
CACCAGTTCCTGGCAGAGATTTTGCAGTGGCGAGCCCAGGCAACTCCTGACCATGTCCTCTTCATGCTGTTAAATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026:ENSMUST00000100203:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(4.0=70.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGGCCCTGCTTCTGTGAT
R:
TGGCATTTAACAGCATGAAGAGGA
Band lengths:
188-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types