RnoINT0047747 @ rn6
Intron Retention
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141855875-141856170:+
Coord C1 exon
chr7:141855875-141855984
Coord A exon
chr7:141855985-141856089
Coord C2 exon
chr7:141856090-141856170
Length
105 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTCCTGTTTTGTGATTTCAGCAC
3' ss Score
6.46
Exon sequences
Seq C1 exon
GTGTAGGCCCTGCCTCTGTGATGGTTGGCAATCTGGTTGCTGGTAAACGCATAGCACAGGCTGCCGGAAGGGACCTCGGTCAAATAGAAGAGAATGATCTGGTGAGGAAG
Seq A exon
GTAAGTTCCAGACAGCCAGGCTCCTCCCAGTGAACACAGGGCACACCTCAGAGTGCAATGTGAACGTTGCATGTGGACCCTGACTCTCCTGTTTTGTGATTTCAG
Seq C2 exon
CACCAGTTCCTGGCGGAGATTCTGCAGTGGCGAGCCCAGGCAACTCCTGACCACGTCCTCTATGTGCTGTTAAATGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106:ENSRNOT00000086577:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(4.0=70.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTGCCTCTGTGATGG
R:
CTTCGCATTTAACAGCACATAGAGG
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]