BtaINT0049320 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29370856-29374706:-
Coord C1 exon
chr5:29374626-29374706
Coord A exon
chr5:29370980-29374625
Coord C2 exon
chr5:29370856-29370979
Length
3646 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
TATACTGTCTTCTGTTCCAGGGC
3' ss Score
11.81
Exon sequences
Seq C1 exon
CACCAGTTTCTGGCGGAGATTTTACAGTGGCGAGCCCAGGCAACTCCTGATCATGTCCTCTTCATGTTGTTAAATGCCAAG
Seq A exon
GTATTAAACATTCAGTTGCATATCTAATCAGCTGGCTATTGTGAGAGTACCTTAGGCACTCTTGATCTCTTTCTTTCATCAGAAAATTTCAGTTGCCAACTCTGAGGGGAGAGTTATTGCTTTCTCCTTGTTTTGATATATGAGGATAAATTGTGCAGTTATTTCAAGGCTGAAATGAGATCTCCTGAAGTGTCGTTCAGTACTGTCTCTTTTTTATCACAATCAAGTCATCTTTATTCAGATAGGAACAGTAGGGACAACCATGTAATTGCAAGATCTACAGATGTGCAGAATGCATTGTGTCAGTGTAATTTTTACTCCGTTTGACTTTTCGTTCTTTGATTTCCACCAGAAATAAAATGACCTTAGGTCAGCATTTTAAAAACCAGAGTAATTTTTAGCACATACTTAATTGATTTTTTGCTAACCTAAAAAGCCAATTGAAAATTATTCAAGAATATATTTTACTGCTTTCTAATGGATGGATCACCAGAATATTATATTTTTTACGTTATACATCTTATGGGAGTCTGTTGAGATTTGTGGATTTTAATGGCTGAACCATTCCCTTCTCCTAGGGATCTTCCTACTCCAGGGATCGAATCTAGGTCTCCTGCATTGCAGGCACATTCTTTACAGTCTGAGCCACAGGGAAGCCGCTTTAATGGTTGAGTCAGGAGCTAAAAGTACTGTGACCTTTGCATAGAACAGTATTTCTCACCAACAGGCAGAAGACTGGAGGATCTATTGGCATCTCTTAGGGGACTTACCCAGATTGCCCCCTTCTGCCCCAGCCCCTTGGATTCTGATATATACACGCACACATACACACAACATTGAGAGTTTATATAATGACAGAACTGAGAGGAATATATTGTGCATCTTAATGAAGAGTCAGTTAAAATCTTAAGAACCATTGCTCTTTGGTAGAAAACTTTGGGACTTCCTTGTCCATCTCTGCATGAAGCGGGCTTCTCTTTAAGCCCATGGATTGATTAGAGTGCTCCCATTTCACTAAGATGATGTCAGTCTAGCTTGTTGCCCAGTCCACTCCCGGGCTTGGCTACAGTTAAAGTTACAGCCCAATAAAAATCATACTCCAGATAAATTTGTTGGTGAACTTAAGTTTAAATTTGCTTTTTGGTTAGAGAAATAATATATATGGGTAACTAAAGGACATGAAGTCCATGTATTCTGTGTATTTTAACATTTTACCTTGGATTAGCCCGAGCCACCAGAAAGCTTAAGAACCATACAACAATGTTCTCTTATGCCAGGAAAATGCTTCTTAAAGAAGTTTAGTTTGGTGCTGTACCATGGACCGAAAAGCAGGCGATTGTGATTATTCTCTGGTGGTCCAGTGCTTAGAACTCTGCGCTTTCACTGCAGGGTGCCCGAGTTCAGTCCCTCATTGGGGAGCTGAGATCCCACAAGCCACACAAAAAAAAGGCTGTTGTAAGAAATGGCCTTATGAATTTAACCTTGATTTTAGCCAAAGAAATATTCTTAATGTCCTACAGTAGACAACTGACTAAATAATTTATGGCATATAAACAAAATACTATGCAGTCATTAAAAACAATGTTGTAGAAGAATCGTTGATGACCCAGAAAATATTCATGATGTGGAAGTAGGAAAAGTAGAATATAAAACTTTAATAAGGGAGTACTTACTGAAGACCCTGTCCTAGATGCTTTCCATTTCATAGTTCATTTTAAGATCGAGTTAACGGAGGCACGGAGACATAAAATCACTTGCCTGAGTTCTCAGGGCCCAGGGCTAGGACTAGGAATTTAGCTCCTTCATTTGAACCCAGACTGGCTTCAGGGCCCGCATTCTTAGCCAGTGCACTCAATAGCCTCTGGCGTAATATAGTATGATATATTTTTTTTAATGTTTCATGTGAATTTATATACAATATATACTTAGTTTTTAAAAACTAGGAAAATACACACCAGAATGTTAATAGTGGTTCCAGCTTATATTTACTAATCTGTATCTTCCAAATTTTCTATATTGAACACCTACTGTTTTATATTCATGAAACTTAAAAGTTATTTCTCCAAAAACTAGCTCAGTAAACTTGTTTTTATCATGAGGTTTTAAAAATTAAGTTTTTAAATAATGAGGACGATGTGCTATTGGCACTGTATAGACAAATAATAGTTTGATTTTATCTGGTGAATTGTAAGGTTCAGTTCAGTTCAGTTGCTCAGTCGTGTCCGACTCTGCGACACCATGAATTGCAGCACGCCAGGCCTCCCTGTCCATCACCAGCTCATTGTAAGGTAGGCATATCCAATACAGGACCAAAACTCATATATTTGTGCACCAGTGTATATTAGAATGAATAGTCCATCAGAAGTAGAATGGATGAGTAACTTGTGGTATGTTCTGATAATTAAATGCTGTGCAGTAACAAAAACGGATGAACCTACACCTAGGTGCCACAGCCTAGATGACACTTCATAGAATGTTGAAAGAAGTAAAGCACAAAATATACATGTATAGCACAATTCTATGAAAATCAAATACTTCATAGATGGTAAAAATATGAAGAAAAAGAAAGCCACTAACATTAAAACGTCACGATAGTGGTCCCCAATGGATGGCATCACTGACTCGATGGACATGTAAGCTCTGGGAGTTGGTGATGGACAGGGATGCCTGGCGTGCTGCAGTCCACGGGGTCGCAAAGAGTTGGACACAACTGAACTGATGGAGGGAAGGGGGCTTCCCAGGTGGCACAGTGGTAAAGAATCTGCCTGCCAGTGCAAGTGACACAAGAGACACAGGTTCGATCCCTGGGTCAGGTAGATCCCCTGGAGAAGAAAAGGACAACCCACTCCAGTATTCTTGCCTGGAAAATTCCATGGATAGAGGAGCCTGGTGGGCTACAGTCCATAGAGTCTCAAAGAGTCAGACATGACCATGCGCCTGAGCCCCAGCCATGGAGGGAAGGAGAGGGCTGGTGAGGGTGTCCATGGGGTGCTTTTGAGCTGCTGGCCGTGGTCTTTTTCACATCAGGCTGGTTCTTAACCTGCATTTTCAGATCTTCTGTGCATTCCCACTTGGGTGTTATATTTACAAAGGAACAGGGGTGCAAAAGCCCAGCTAAGTAAAACTTGAATTGACAAGAAGGATTATTTATGAAGACCCGCAGGAGAAATTATTCTCAAGACCTTTATTGTTAGCTAGCAGACTCAGGTTCACTGTTCCTGTTTTCGTTTCCGTCTCTGCTGTTAGAATACATGGAGCCAGACTTGTGTTTTTCTCATAGCAAATGTATTTGACCACATAGCCAGTGTCCTGACCTCATTCTTGCCTTCATTCTACTTTTCTTTATTTTCTTTCTACTTTTATTTCTTCACTTAAAAAAAAATTGCTATATAGTTTTAAAGCTGCTTTACATAAGAAAGACTGTAAATACATATGTTTGATTTGAGTTAATGTTGTTAGTCCCTCAGTGCTTTCAGACACTGAGAAAGAAAAAGTAAGACCACACACGTCTTTCGGTGCTTGGGAACGTTTCACTGAATTTGATAGCAAGGCACACGCCTTTGATGTAGTGTCAGATTGGCCGCATTTGTTACCGTTGTATTTCATTACTGAGCTTCGCCCATGCGTATACTGTCTTCTGTTCCAG
Seq C2 exon
GGCACTACAGTGTGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGCGGATTGCGGCCGTCCTTGGTGACAAGGGGCATCTAAACGCGGGAGAGAACGTGGTGCTGCTCTATCCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246:ENSBTAT00000006902:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(4.0=70.4)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]