GgaINT1011313 @ galGal4
Intron Retention
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:163130-163924:-
Coord C1 exon
chrLGE22C19W28_E50C23:163844-163924
Coord A exon
chrLGE22C19W28_E50C23:163254-163843
Coord C2 exon
chrLGE22C19W28_E50C23:163130-163253
Length
590 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CACTTCTGTCTCTTTTCAAGGGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
CACCAGTTCCTGACAGAGGTGTTACAGTGGAGAGCTCACACAACTCCTGACCATGCGCTCTTCCTCTTGTTAAATGCCAAG
Seq A exon
GTACAGTCACTTTTTGGTGGTTTTTTTAAGGTCCACAGTGTGTTGTTCAGCCCAAGTTTGAGACTGTGTTTAAAGTCTTTGCCCACTGCAGTGTCCTCTATTTAGTCTCTTTGTCAGATGTTGCCGTAGGGTTTCTAACTGAAAATTTGCACCTTTGAACATGCAGGTCATTTGTCATCTTAATGCCCACAGTGGTTTGATGCTTCATTTTAAAACTGAGCGTGTTTGTAGGTCCCACTGGTTCCTGTATCATTTAATGATGTATCCCTGTTGAGTATATTCTGGCAAGGTTCTGGTGCAAGAAGGACCTGAACTGACTCCTGGAAGGTAGAATTTTCTAGAACAGATCTAACTCTGTTTCTGTCTCTTCCCAGTTGTAGTGGATAAACAGCTCAGTGAGCGCCAGCAGCATGTAGGTATTGATAACTAGTAGCTATAGACTAATGCTAGTGAGCAAGGTTGTTGGGTTGTTCTGTTTGTTTTTTTTTGCTGTTTGGTTTGGTTCCAGCAACTGTCTTACTGACACGTGTTGTGCTTGCTGGAAAGTAGTGTCAGAGGCTGTGGTTAGAGCACTTCTGTCTCTTTTCAAG
Seq C2 exon
GGAACTGCTGTGTGTACAGCCACCTGCCTTCAGTTGCACAAAAAAGCTGAGAGAATTGCATCAGTGCTCTGTGACAAAGGACATCTCAATGCAGGAGACAACGTGGTGCTTCTTTATCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139:ENSGALT00000009909:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(4.0=70.4)
A:
NA
C2:
PF0050123=AMP-binding=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTTCCTGACAGAGGTGT
R:
GGAGGATAAAGAAGCACCACGT
Band lengths:
202-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]