MmuINT0049585 @ mm10
Intron Retention
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100190256-100191110:+
Coord C1 exon
chr15:100190256-100190336
Coord A exon
chr15:100190337-100190986
Coord C2 exon
chr15:100190987-100191110
Length
650 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
TTGTCCTTCTTGTATTGAAGGGA
3' ss Score
7.64
Exon sequences
Seq C1 exon
CACCAGTTCCTGGCAGAGATTTTGCAGTGGCGAGCCCAGGCAACTCCTGACCATGTCCTCTTCATGCTGTTAAATGCCAAG
Seq A exon
GTATTAAAATCACTTGCAAGATTGGAGAGTGTTTGCCCAGCATGGGCAAGGCCCTAGGCTTAACCCCAAGCCACATAACTGGGCATAGTAATGCATGCCTGCAATCCCAACACTTAGGAGGTAGAAGCAGAAAAATTTGGAGTTAAAGATCATCCTCAAACTACTTAGCCTCGGCCAGCCTGTTCCATGAGAACCGTCTCAAAACAAAGAATAGAGAAAGAAAGAAACGTTAGCTGGGCAGTGCGGCCCATGCCTTTAGTCCTAGTACTCCAGAGGCAAAGGAGGGCCAATCTCTGTTTGAGGCTAGCCTGGTCTCCAGAGTGAGTTCCAGTACAGCCTGGAGTACACAAAGAAACCCTGTCTCAAAAAAGCAAAGAGAGAAAAAAGAAAGAAAGGAAAGGAAGATAGATTAACAAAACACTAAGAAAGAAAGACTGTAAATATATTTGGTTTAAGATAATTAACATACCCTTCGAACCTCGGACACGAAAAAGAGGAATCCACACCTATTTTTTGTTTCCAGGGGAGTTGTCTCAGCCGATAATTCAGCCAGAAGCCAAGCCTGTTGAGTGTAATGTCTTCGTGACTGTACTTGTGTGTGTCTCTGTCTCTGCACTGAACTTATCCTGATTGTCCTTCTTGTATTGAAG
Seq C2 exon
GGAACTACTGTGTGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGAGGATCGCTTCAGTACTTGGTGACAAGGGACATCTGAATGCAGGGGACAATGTAGTATTGCTCTACCCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026:ENSMUST00000100203:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(4.0=70.4)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGCAGAGATTTTGCAGT
R:
CAGGCGGGTAGAGCAATACTAC
Band lengths:
198-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types