GgaEX1019778 @ galGal4
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:163130-164170:-
Coord C1 exon
chrLGE22C19W28_E50C23:164061-164170
Coord A exon
chrLGE22C19W28_E50C23:163844-163924
Coord C2 exon
chrLGE22C19W28_E50C23:163130-163253
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTCCCGCCTCTTTGTTTTAGCAC
3' ss Score
9.84
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTGTGGGCCCTGCCTCTGTGATGGTGGGGAACCTGGTTGCTGGGAAGCGTATTGCTCAAGCCTCTGGAAGAGATCTTGGTCAAATAGAAGACAATGATTTAGTTAAAAAG
Seq A exon
CACCAGTTCCTGACAGAGGTGTTACAGTGGAGAGCTCACACAACTCCTGACCATGCGCTCTTCCTCTTGTTAAATGCCAAG
Seq C2 exon
GGAACTGCTGTGTGTACAGCCACCTGCCTTCAGTTGCACAAAAAAGCTGAGAGAATTGCATCAGTGCTCTGTGACAAAGGACATCTCAATGCAGGAGACAACGTGGTGCTTCTTTATCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'44-40,'44-38,45-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTGCTGGGAAGCGTATTG
R:
CCACGTTGTCTCCTGCATTGA
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]