MmuEX0014705 @ mm10
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100190032-100191110:+
Coord C1 exon
chr15:100190032-100190141
Coord A exon
chr15:100190256-100190336
Coord C2 exon
chr15:100190987-100191110
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCGTTGTGATTTTAGCAC
3' ss Score
6.48
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GTGTAGGCCCTGCTTCTGTGATGGTTGGGAATCTGGTTGCTGGTAAACGCATAGCACAGGCTGCCGGAAGGGACCTGGGCCAAATAGAAGAGAATGACCTGGTGAGGAAG
Seq A exon
CACCAGTTCCTGGCAGAGATTTTGCAGTGGCGAGCCCAGGCAACTCCTGACCATGTCCTCTTCATGCTGTTAAATGCCAAG
Seq C2 exon
GGAACTACTGTGTGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGAGGATCGCTTCAGTACTTGGTGACAAGGGACATCTGAATGCAGGGGACAATGTAGTATTGCTCTACCCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-'52-40,'52-39,53-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGGCCCTGCTTCTGTGAT
R:
ACTGAAGCGATCCTCTCTGCT
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types