BtaEX6020712 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29370856-29374954:-
Coord C1 exon
chr5:29374845-29374954
Coord A exon
chr5:29374626-29374706
Coord C2 exon
chr5:29370856-29370979
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCCTTATGATTTCAGCAC
3' ss Score
6.5
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GTGTAGGCCCTGCTTCTGTGATGGTTGGGAATCTGGTTGCAGGAAAACGCATAGCACAAGCTGCAGGAAGGGATCTCGGGCAAATTGAAGAGAATGATTTAGTGAGGAAG
Seq A exon
CACCAGTTTCTGGCGGAGATTTTACAGTGGCGAGCCCAGGCAACTCCTGATCATGTCCTCTTCATGTTGTTAAATGCCAAG
Seq C2 exon
GGCACTACAGTGTGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGCGGATTGCGGCCGTCCTTGGTGACAAGGGGCATCTAAACGCGGGAGAGAACGTGGTGCTGCTCTATCCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-'29-32,'29-31,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTTGCAGGAAAACGCAT
R:
GCGTTTAGATGCCCCTTGTCA
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]