DreEX6081096 @ danRer10
Exon Skipping
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27446389-27449826:-
Coord C1 exon
chr23:27449714-27449826
Coord A exon
chr23:27446595-27446675
Coord C2 exon
chr23:27446389-27446512
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTTCTTGTCTCACAGCAT
3' ss Score
9.91
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
TGGGAGTCGGTCCAGCTTCCATCATGGTAGGCAACCTGGTAGCAGGAAAGAGGATTGCACAGGCTAGTGGGAGAGATCTTGGGCTAATTGATGACCAGGAGCAATCCAGAAAG
Seq A exon
CATCAGTTCCTGTCTGAAGCCCTGCAGTGGCGAGCGCAGACTGACCCTGATCATGTTCTCTACATGCTGCTGAATGCAAAG
Seq C2 exon
GGTGTAGCAGTGAGCACGGCCACGTGTTCACAACTGCACAAGAGAGCAGAGAAGATCACAGCGGCCTTGTTGGAAAGAGGAGGAATTAACACTGGAGACAACGTAGTACTGCTTTATCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350-'32-29,'32-28,34-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGTCCAGCTTCCATCATG
R:
CCGCTGTGATCTTCTCTGCTC
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]