RnoEX6034069 @ rn6
Exon Skipping
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141855875-141856914:+
Coord C1 exon
chr7:141855875-141855984
Coord A exon
chr7:141856090-141856170
Coord C2 exon
chr7:141856791-141856914
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTTTTGTGATTTCAGCAC
3' ss Score
6.46
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
GTGTAGGCCCTGCCTCTGTGATGGTTGGCAATCTGGTTGCTGGTAAACGCATAGCACAGGCTGCCGGAAGGGACCTCGGTCAAATAGAAGAGAATGATCTGGTGAGGAAG
Seq A exon
CACCAGTTCCTGGCGGAGATTCTGCAGTGGCGAGCCCAGGCAACTCCTGACCACGTCCTCTATGTGCTGTTAAATGCGAAG
Seq C2 exon
GGAACTACTGTGTGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGAGGATCGCTTCAGTACTTGGTGACAAGGGACATCTGAATGCAGGGGACAATGTGGTTTTGCTCTACCCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106-'39-39,'39-38,40-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAAACGCATAGCACAGGC
R:
ACCACATTGTCCCCTGCATTC
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]