HsaEX6066505 @ hg19
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:29284]
Coordinates
chr12:51112492-51115179:+
Coord C1 exon
chr12:51112492-51112601
Coord A exon
chr12:51112738-51112818
Coord C2 exon
chr12:51115056-51115179
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTCTGGTTTATGACTTCAGCAC
3' ss Score
4.18
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GTGTAGGCCCTGCTTCCGTGATGGTTGGGAATCTGGTTGCTGGAAAACGTATAGCACAAGCTGCTGGAAGGGATCTGGGACAAATAGAAGAGAATGATTTGGTGAGGAAG
Seq A exon
CACCAGTTTCTGGCAGAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCATGTACTCTTCATGCTGTTAAATGCCAAG
Seq C2 exon
GGAACCACTGTATGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGAGGATTGCATCTGTTCTTGGTGATAAGGGACATCTAAATGCAGGAGATAATGTGGTGTTGCTCTATCCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-'27-27,'27-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGCTGGAAGGGATCTG
R:
GGTGGATAGAGCAACACCACA
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)