BtaINT0049321 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29369340-29370979:-
Coord C1 exon
chr5:29370856-29370979
Coord A exon
chr5:29369462-29370855
Coord C2 exon
chr5:29369340-29369461
Length
1394 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TAATTGGCTGTGTCTTGCAGGCA
3' ss Score
7.62
Exon sequences
Seq C1 exon
GGCACTACAGTGTGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGCGGATTGCGGCCGTCCTTGGTGACAAGGGGCATCTAAACGCGGGAGAGAACGTGGTGCTGCTCTATCCACCTG
Seq A exon
GTGAGCGCTGGCTCGGTAGACTGCACAATGTCTGTTACTAGACTGCTGACCCTAAGAGGACAGGAGCTCAGGGCCACCGTACGTGACCACATGGGCTGTGCATGGAAGCTGCTGCCGTGCAGACAACCCCTCCCTCCAGAGTTGTGTGGTATGGGGGTTCTGGCTGGGACCGAGCCTGTTGTACTTACTCTTGTATTTCCACTGTCTAGCTCAGTATGGTAAATACTGAATGAGTGGTGATTTCTTGACTTTTGGAAACACTCAAAAAAGACTGTTTCTAGGAGTGCTCAGGAACTGTTCACCCAGTTTCCAAAAATATGTTGTGCATGAACTCTGACTTAAATTCTCCACATGATAATTGGTGCTTACTGTCCCTCGATTATTACTGCTTTCATCTTCCACACTCTATAATCTAGTTCAGCAACCTCTTCACAGCAAGAGGGACTCAATTATTTGATGACAGTGTGGTGTATTCAGAATTTTAGGCAGACTATTTCAGTTGTCCCTTCCTTTAGTCTTTTGTCACCTAACCTACTCATACATCCAGGCTTCTGTGGTCTTTTATCCCATTTACTTCATTTTACTCAGTGATTCTTACTTGCTCTTCTATTTATATTGATACTAAGATTTTTTAGAAGCTGTTAAGAACAACTTTGTTCTGGGAGGTTATTTTCTGTCCACCAGTTAATCACGGTGATGGACATCGGCATTGCCCGAGGGGGCTGCCCTCCGAGTCCTTATATTGCAGAGGGTTTGTATCAAGTGACGTTTTGCCTCCCTAAAACCTGCACCCAACAGGGAAGTGACATCTCAGGGGTCTGATTGTTCTTAAAACATAGTGGCCTTCTTAAGATTGAAAGAAAGCTCAGATGCTCCTCATCTCTCCTTTCCCATTGTTTTATTTCCCAAGTGAAACAGCCCTAATCTCTGCACTTATTCTTTCCTAAATAATATCAAGTAATGATGTCAAAATACCTTCTTCAGGTATCTTTCAAGTGTTTTCTTTGCTTCTGACTTCCTTTTTCATTTGTTTATTCTTGGCATCTCGATATTTTTTAAAAAGTTGTTTTATATGCTTCCTTCTTTTACCTTCAGTTTCTTCTTAAGTTAAAAAATTTCTAGGAATTTCCCTGGTGGTCCAGTGGTTAAGATGCCACAGTTCCAAGGTAAGGGGCATGGGTTCCATCCCTGATCAGGGAACTAAGATCCCATATGCCACACAGCCAAAAAACTTCTTTTTTTCTTTAAAAAAAAAAAAAAAATTCTGATAATGTCTCCATTAAATTTTGGTCTAGTTAACCTGTCTGGCACACGATTTAATAAGCTAGGTTTGGAAACTCTGCCTTTTGCTTTCTCAGTGACAAACCGGGCCGCTAATTGGCTGTGTCTTGCAG
Seq C2 exon
GCATAGAGTTAATCGCTGCATTCTACGGCTGTCTGTACGCGGGGTGCATACCTGTGACTGTCAGACCCCCTCATGCTCAGAACCTCACAGCCACGTTGCCCACTGTCCGCATGATTGTTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246:ENSBTAT00000006902:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTACAGTGTGCACAGCCAG
R:
AACAATCATGCGGACAGTGGG
Band lengths:
241-1635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]