HsaINT0048130 @ hg38
Intron Retention
Gene
ENSG00000066084 | DIP2B
Description
disco interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr12:50721273-50723323:+
Coord C1 exon
chr12:50721273-50721396
Coord A exon
chr12:50721397-50723201
Coord C2 exon
chr12:50723202-50723323
Length
1805 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CAGGGTCCTTTGTCTTGCAGGCA
3' ss Score
9.22
Exon sequences
Seq C1 exon
GGAACCACTGTATGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGAGGATTGCATCTGTTCTTGGTGATAAGGGACATCTAAATGCAGGAGATAATGTGGTGTTGCTCTATCCACCTG
Seq A exon
GTAAGCATTGGATTGGCAGACTAGAGTTTAAGCTCCAATACTAGACTGACTACAAATTATAAAAGGATAGGCACTCAGAGCTACTCTCTATGACTTGCAAGCAGTGTACTTCCCAACACTTAGAAGACCATGCACACAGGCCAAAGTGGGAACCAATCCTCACCCCCCAAGTTGTGCAGTACAGTGGCTCTCCTGGGACCATGTCTGTTTTTGTACCTTTAGATTTCTATTAGTGCCTGGCACATAAAAGGCACTCAGTAAATAATGAATGAATGAAGTCTTCAGCTACTTGGCTTTTGGAAACCTTCAAAACAGATGCTTTGTTTCTATGAATGTTCAGGAATGGGGCAATTTCACCCAGTCCCCAAAGAAATGTTGTGCGTGAATTCTGTGAACATTTTTCGTATTATGATTGATGTTACTCAGGAGGAATAACTGCAGAAACCAGGAACGGTTAACTAGGAAAATAAAAGAATGGAGAAAGGAGAGGTGAGGAAGCCCTGAGCTTTTTAAAAATATTTAGAAAGCTGATGTATAAAAAGCCATCAGACTTCTTAGATGTTGTTGAAGGGGTGTGAGTTTTGAAGGGGTGTGAGTTTTCATATTACGATTTAGTCTTCTTCTGTTGTTGCTACTTTCATGTTCTGATTTAATTCAACAACCTCATCTTCATAGTAAGAGGGGTTCAGAATTATTTGGTGACAATTTGGTGTAAAGATTCAAAATTCTGGGTGAAATATTGGAGTTTTCCCTTCATTATTTCTGTCACCTAATCCACTCATACATCCAGCTTTCTTTGGCCTGTTATCCCCCCACACTTCATATTGTTCTGTGATTTTTTTTTGTTTGTTTGTTTGTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTGAGACGGAGCCTTGCTCTGCCACCCACTGCAACCTCCGCCTCCCTGGTTCCAGTGATTCTCCTGCCTCAGCCTCCTGGGTAGCTGGGATCACAGGCACACGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTCGTCTCAAACTCCTGACCTCAGGTGATCCACCTGCCCCAACCTTCCAAAGTGCTGGGATTACAGGTGTGTGCCACCATGCCTGGCTCATTATGTGATTCTCATGTGCTGCCTTATTTACCTAGATACTGAGATTTCGTAGAAGATCATGTGATAAAGCAGTCCCCACCATTACATGCCCAGGAGATGGCCTTGCACCTGTCAGTCGGTGAGAGGCCACGGGGAAGGACCTGAGCTCTTCCTGACGAGGCCTCTGCCCAGAGTCTTCCTCAGACTGAGTCACACTTTGCTCCCTAAAACTCATACCCCTTCAACAACATCTAAGAAGTCTGATGGCTCTTTTTAGAGCAGCCTTCTAAATATTTTTAAGAAGCTCAGGGCTTCCTCACCTCTCCTTTCTCCATTCTTTTATTTTCCTAGTTAACCATTCCTGGTTTCTGCAGTTATTCCTCCTGAGTAATATCAAGCAATAATATCAATATACCTTCTTCAGAAATATTTCAGGAGTTTACTGCTGATTTCCTTCCTTTTTTGTTAATTGTTTTCTCTATATTTTCTAAAGTTTTATATGCTTCCTTCTTTCACTTTCAATATCTTCTGCTAGGGTCTTTGTTAAATTATGGTCTACAGAACCTGTCTGGCACATGATTTAATTGTTTTGGAAAATTTGCCTTTTAGTTTCTCAGTGCTCTTAGGCAGTTCAGTGACTCTCCTGACAGGGTCCTTTGTCTTGCAG
Seq C2 exon
GCATTGAGTTAATCGCCGCCTTCTATGGCTGCCTGTATGCGGGCTGTATACCTGTGACCGTCAGACCTCCACATGCTCAGAACCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084:ENST00000546732:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTATGCACAGCCAGCTGC
R:
TCAACAATCATTCGGACAGTGGG
Band lengths:
238-2043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development