GgaINT0001079 @ galGal3
Intron Retention
Gene
ENSGALG00000006139 | DIP2B
Description
NA
Coordinates
chrE22C19W28_E50C23:137026-138270:-
Coord C1 exon
chrE22C19W28_E50C23:138147-138270
Coord A exon
chrE22C19W28_E50C23:137148-138146
Coord C2 exon
chrE22C19W28_E50C23:137026-137147
Length
999 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CAGCCTGTGTGTCCTTGCAGGCA
3' ss Score
9.89
Exon sequences
Seq C1 exon
GGAACTGCTGTGTGTACAGCCACCTGCCTTCAGTTGCACAAAAAAGCTGAGAGAATTGCATCAGTGCTCTGTGACAAAGGACATCTCAATGCAGGAGACAACGTGGTGCTTCTTTATCCTCCTG
Seq A exon
GTAAGCAAGCTTTAATAAGATCTGCATCCCACCATGGAAATGCAGTATGGTGTTTCTTTGAAATTTCACTGAGATCTGGAAGTTCAGGTGGGATCAGTGAAACACCAATACATCAGGACTGCATAACTTCCTGATCTAGTTTTGACTCCATAGAGGGCTGTCCTCATGTCTTGCAGTTGCAGTATCACAACTCCAACATTGACTCTTTAGTTTTGGAAGAGCCGATTTGTACCTTCTCACTCCTGGAGAGACGTTCTCAGCTCTAGGGATCTTACTGTCTCCTGATGTTTAGGATAAAAGCTCTTTTCTTTGTTGTTATCAAAGAACCTATGGTATGATGACACTCACTGCAAAATTATTAGAAATGTGTGACCACACTGCATGTGCTGGAGAAATGAATTATGTGCCTTAACAGAGACCTCTTGGCTCCTGGTCTGTTCAGATCTTGTTTGTCTGAAGTCACGTTGACAATTAGCAGCTCTTTATCCAGGGAAAGCTGTGAGAAATGGCAGGGTGGGTTCTGGTACAGACTGGTGCCATCACCTTCAGCTGTTAGCTGCATCTTCTACAGCAGTAGGTTGGGAACAGTGGGAGGCGTGATCTGCCTGCTGTCACTGGTAGTGCACACCTTTATCACTTGGCGTGTGTATGACGCTCACTGCTGATGAGAGGTGCTGTGTACTTCCACTGCCAGAGACTCTGTTTTGGACTGACTGACTTCTGAGTCGTTCAACACTGGGATATATTCTTTTCCTGAAAAATGGATGGATATGGTTTGCTGTGGTCAGTCTTCTCTGCTTTCCCAGTTCCCTATCCCAAGCTTCCCTAGCTTCTTTGTCATGCTGGCCTAACTGTTTGGACTGCTTATATTGCACACCTGTGCTGTGGGAGTGTACCTTTTTCTAATGAAAATTTTGACTGATGCTCAGGGAAAATGCCCTCAGGGGAAAGGCTGGTGTCACCAGAGTGCTGTACACTACAGCCTGTGTGTCCTTGCAG
Seq C2 exon
GCATTGAGCTAATCACCGCGTTCTATGGCTGTTTGTATGCTGGCTGCATCCCTGTGACGGTGAGACCACCTCATGCTCAGAGCCTCACTGCTACTCTGCCCACTGTACGAATGATCGTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139:ENSGALT00000009909:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACAGCCACCTGCCTTC
R:
CGATCATTCGTACAGTGGGCA
Band lengths:
230-1229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]