BtaINT0049347 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47125940-47127439:+
Coord C1 exon
chr13:47125940-47126076
Coord A exon
chr13:47126077-47127230
Coord C2 exon
chr13:47127231-47127439
Length
1154 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CAAGAGTTCATTGTCCCCAGGTG
3' ss Score
5.56
Exon sequences
Seq C1 exon
CCATCATGTGTTCAGTGAAGCCTGATGGGGTTCCCCAGCTGTGCAGGACAGACGAAGTCGGGGAGCTCTGCGTGTGCGCGGTGGCCACGGGCATGTCCTACTATGGCCTCTCGGGTATGACCAAGAACACCTTCGAG
Seq A exon
GTAGGTGGCAGGTGAGCCCCATCAGACAGCTTTTGCCAGGTGTGTGGAATAGATGTAAAAGGAGATGGTGATTTCTCAATAGAACATGTTCATGGTAATTAAAATGGTTGTACTTTCTCCTGCCATTTTCTATAGCTTTTAATAAATTTGGCTTAGCAACCTTGTTTTCACCTCATAACCAGAGCTGAGAAAGAGCAAGTACAGTTTATCTAGAGGCAGCCTTTTTCTCATTGCCATTCTCACCCATCTAGAAAGAGCAGCAGCTGATGGGTGGGGGCTGGGGAGCGCGCAGCCCTGCCGAGGCGGAGAGCAGCGGCCTCCTCGGGGACTGTCCGCCTCGACCAAGCATTCGCACTGCACAGCTGCCTCCACCACACAAGCGTGTGTCCGTGCTGTGTGCACATGGTGTGGCGTGCAGTTAGCATACACAAATGCACACTGCCTGGTAGACCCAACATTCTCAGAATTCTTACCATTTCACCAAGTGTGCTGACCTTAGGAGGAGCACACTTTGACTAAGTTGTATGTTAGCAAATATGAGTTGATTGGGGATAAATTTTTTAAAGGCTATAAATAGAACTTTGGATGCGAACACATATGATGTGGCTTGTACAGGCAGATCCGTTGGGTCAGGATTCAGGTTTCTAAGTGCCCTTGAAACTGAGCCAGACACAGTCTAAATAAAACCTATCTTCTTTTCTGTGTGGCTTATGTGTTCAAACTAGGGGTCGAGTTTGAACTCGTGGTGGGGCTGCTCCCTCTGTATTTTTGAGTGTGTTTCCCGTAAGGAAGACAGCAGTGTAATGAACAGGAATCATTTTACTACTGACAGATGTTATTTAAAGTGCACCTTGCTTCTCCACTTAACCATTTTTATGCTGTGGTTTTATAAGTAGAAGAATGAATTAATGTTCGTTAGACTGTGGCAGGCCTCTTCAGAGGGCCCTGCGTGTGGGCCAGGGACGAGTTGTGGGAATGGGAATGGGGATGGGGGAGGGGTGTGCAGCCTGGCACTCACGGCAGCTGTGCAGACCTGGACTTCTCCCACCAGGGCCAGGTGAAGAGACCCAGTGGAGGGAAGCAGGAGCAGTGGGTTCCATGGAGGAGGGCGGAGGTTGGGCTCCAGCAGGCACTCAAGAGTTCATTGTCCCCAG
Seq C2 exon
GTGTTCCCGGTGACGAGCTCAGGGGCCCCGGTCAGTGAGTACCCCTTCGTGAGGACGGGCTTGCTTGGCTTCGTTGGCCCTGGAGGGCTTGTGTTCGTGGTGGGCAAGATGGACGGGCTTATGGTGGTCAGCGGGCGCAGACACAACGCTGATGACATCGTGGCCACAGCACTGGCTGTGGAACCCATGAAGTTCGTCTACAGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531:ENSBTAT00000015282:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.4=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(9.0=61.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCATGTGTTCAGTGAAGCCT
R:
CCCTGTAGACGAACTTCATGGG
Band lengths:
342-1496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development