GgaINT0100239 @ galGal3
Intron Retention
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9921972-9924544:-
Coord C1 exon
chr2:9924408-9924544
Coord A exon
chr2:9922181-9924407
Coord C2 exon
chr2:9921972-9922180
Length
2227 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TGTGTTTCTGTGTCTTAAAGGTG
3' ss Score
10.37
Exon sequences
Seq C1 exon
CTATAATGTGTTCAGTAAAGCCAGATGGAATTCCTCAGCTCTGTAAAACAGATGAAATAGGAGAACTATGTGTATGTGCTATTGCAACGGGTACATCGTATTATGGACTCTCGGGCATGACCAAAAACACTTTTGAG
Seq A exon
GTAAGCTGGCAAAAATGCTATGTAAAATACTTCCTTTTTAACTTTCTAAGGGTAATATTTCACTTAAAATACTGACAGTAATAATATTAGAATATCAGCAATAATCAGTGCCTGTGGTTTGGGACCTTAGCCAGATAATCCTCACTGAATCCCATTTCATTAAGTGCAAAAACAGATCTCTCTGTGGGTTTACTTCTGGCTCTAAGGGCCAGAATAATTTTGGAAGAAGATACCAGGTGCCGAAACAGTCACAGGGAAAGCAGGAAGAAAGGCAAAGTTCAAAAGGTAATAATGTACATCAGCTAGCTGCATGCAGAATTGGATTGTTGCAAGCAGTAGGAAAGCTGCTGTATGTCCTTAAAAGCAGTCTCCATCATTTCCACAGCCCAGCCTGCATTTAAAGCCTGCATTTACACAGAAACCTGACAGACACAGCCTTCAAGACATATCTGAATAGTGAAGATAACTTTTCCTAATTAGTGCCCCCCACCTGCTTTTATTTGAACAGCCTGAGGTGAAAACTTCTGTGCTTTGTGTGATCTGTCTTCCAGTACATTTCAGCAGCAGCGTAGACTGCTGTACTGACAGCTCGTTGTACCTGCTCACTTGTTCTCATTAACTTCTGTTGAAGCCAGGAAGAAATGGTGGACAAATCAGAGGAACAGTGAAGAATATTCAGCTGAGACTTTTATTCATTCACATTCTCATTATTTTCTCATTAAATATTTGAGGAAAATTTAAGAAAAGTGTATTTACATTTCTGTTAACAAATGTTCTTTCTAATATTATTATATTTTATGGGCTACGCATGTCTAACATCTCCTGCAAAATGGTTTCAGCTTTCCTTATGCAGAACTGAATATTGTAAACATAATACATTAAATAATTAATGGGTGCTGATAGATATAATTCTCCATTCTGCTACTGATGCCAAGAATCCTACTACGCTATTGTGACCTGAAATTTGTAGATCGTTGATTACTGTGCTACAAGAGCAATTAGCAGTACCCATTGTGAATGATAATCCCAGATCTGACATATTTCAGGGTAGAAAGGTACTTACATTCATTCTGGAGTACTTGCTGTAATTATAAAATCATTCATAATTCATAACTGGATCTGCAGTTGAACAGTGCATTTAGAGATATTCCAAATGGTAAGCAAATAAATTACCACTGAGTCAGCAGGACTACTCATTTTTGAAGTTAAGCACGTTCTTAAGAACCCTCATCAAGTGGGACTCTCTTCTCTTTTATGGTGTAATTTGTATTGCAGGTAGCAGTCTGAGGTTTGTGTTGCTGAGATGAGTTACGGCTGAGGGTGTACAAGCTTTAAATCTGCTCAGGAGGAGCCACCTGTGAGCATCTGGCAGCAGAATTTGACCTTTATTTTCAGATGAGCCCTGGAGGACTCTTTGTAGTCATGGTCTTCCACCTGCCATTGTCATAAAGAACTTACATTTGGACTGTTTCAGTTTTTAAAGAAAAGATAGTAGGGAAGTGTGCTTGTGTCAGAATACAATCCAAGTAGCTCACGAGAAGAATAATGCTGAGCTAAATGGTATGAGAAAAACAGAATAAATCGACATGGATAGAAATTATCCCATGAAACTCATCTATACATTTGGTGTTCAAAAGATTGGAGTTGCTGTAGAGGACTTTTTTCATTTTCTGACATTAACAGAGGTACTGTGAGGACTTAATTGACCTTAGATAAAAGCATCAAGAGTCATTAAAATACAGTACCTAAAAATAGCTTTACTTCTAGCCTGTTTATTTTTCTTTACTACATTGAAATCGAGTATGAGATACTGAAACGAGTATTTACTGTCATGTTTGCTATTTACTTACTGAGGTACTCTGTGTAGCACCTCCCATTAATTTTGCTTAGTGCAACATGTTTGTTATTTTTTAATTCAATACTATTTACCTTGATTAATTGATTGATTGATTGACTTATGTCAGAAATTATTTACAAGCCATAGCTAGGGAAAATGCATTTGGTAAGCAGAGTGAGGCTGAACTTGCCAAGGCTCAGATACTGAGAATTATACACTGTAGCACAGGAATTTCTCAGTGTTCTGTTTTTGGTCATAGAAAATAAAAGAATATCATCAGAGACTTATTTACTTTATTCCAAAGGAGCTGTCTGAAAAACCACACCTGAAATACTAAGTGGTATCATTTCAGTCTATAGAATTGATAACTTGTGTTTCTGTGTCTTAAAG
Seq C2 exon
GTGTTTCCTATGACCAGTTCTGGTGGCCCTATTACTGAATATCCGTTTATAAGGACTGGACTACTAGGCTTTATAGGACCGGGTGGACTTGTCTTTGTTATTGGCAAAATGGATGGTTTGATGGTTGTCAGTGGAAGAAGACATAATGCTGATGACATTGTAGCAACAGCACTGGCAGTGGAACCAATGAAATTTGTCTACAGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652:ENSGALT00000010760:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.4=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(9.0=61.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]