RnoINT0047778 @ rn6
Intron Retention
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63744544-63746494:+
Coord C1 exon
chr17:63744544-63744680
Coord A exon
chr17:63744681-63746285
Coord C2 exon
chr17:63746286-63746494
Length
1605 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TTGTAGCCTTGTTCCCCTAGGTA
3' ss Score
9.11
Exon sequences
Seq C1 exon
CCATCATGTGTTCAGTGAAGCCGGATGGGGTGCCTCAGCTGTGCAGGACGGATGAAATTGGGGAGCTCTGTGTCTGTGCAGTTGCCACAGGAACGTCATATTATGGTCTCTCGGGCATGACCAAGAACACCTTTGAG
Seq A exon
GTAGGTTGATGAGAAGATTCTTCACCTTTGCTATATGTTCAGAAACAGATAAGATGAAGATTTCACAAAAGAACGTTAATATTAAGTAAACTTTTTGCATACTATTTTTGTTTTTGATAATTATGTTATCAGCATTATTCTGACCTTTTAGCTAGTATCTAGAAAGAATAAGCAGTTTCTTTTAAGCTGGGTTTTTTTTTGTGTATTGTTCTCAGCTGACAATGAGTGATGAAAAACCACATGTGTGATAGGAGATGATCCACATAGGTGTGTGGGTAAATGTCCTTACTCGGGAAGCCTGCTGGTCATTCCCACAGTCTTGTAGCACCAACTAAGCTTGGCGGGGTGTGAACTCAGGAGAACCTGAACAAATGTGCACATTAAATAATGATTTCAGTGGTGCAAGTGAGTATGCAAGATATATGTGGTAAGAGATCATGGGTATAGATATACATGTAGTATGTGGATATGTGCAGTGCACGTGTGGGCTGTGTCTATGTGGGATATGTATAAGGTGTGTGCCATGCACATGTTACTATCTGGTGTCCACAGATAATCTACTTTTTGTGAGTGGTGAACACATAGTGAACAGAGATATGGAAGGAGTTAAATCTCAGGTTCAAGTGTCATGCACTATATCAGTAGTCTTAGAATTTCTTTTTCTCATATGGTATTTAGCCTAAGCCTTAGGAGTAACACAAAATTTCACTGATTCATGAGTAGAATAGATTATTCATGCCTAAATGTTAGATTTGGGCTACAGTTTAGTTAAATTTCCTTTTTTTAAAAATGTAATTCAACTTCTAGTTTGAAATAAACTAGGTTTGCATTTTGGACTAGCTGTGTTCTCTTTACATTTTCCTTTTCAGCATGCTTCCAATAAGGAAAGTAGCATTTTAATGAATAGGGATCAGCTACCACCAGTGTGCATTATTTTAAAATGTATCTTGTGTCTCCATTAACTACTTTCACCTGGTATTTTAAGCATAGTGGCTGCTGTCTGTCTGGAGGCTTGGAGACTAAGAGAGGAGCTTCCTTAAAGCCTTTACACATCACCCAGACATGTAGAAGTGAAAGAACTTGGCTGAGCCTATGAGGAAACAAAGGGAAATGTGTTCCCATGTACCTTAGTTACTTTTACCTCCTGTAGCTGCCTGACAAAAACTACTGAAATGGAAAGAGTTTATCTTGGTTAGGTTTAGAGTACAGTCCATCATGCTGGGGAGGCCATGGTGGCAGGAATGTAAGATGCCCCACTGTACCCATGGTCAAGAAGCACCAAGAGATGAGTGCTAGTGCTTAGCTTCCTTTGTGTTCTGTTTAAGCCCTCAGCCCATGAAACACTATGCCTCATATTCCAACGTCATCTTCCCTCGGGTATAACCAGAGGCGTGTCTGATACGTGATTAAAAATCCAGTCTAATGGACAATGAAAAGTAAACATTACACCATGTTTGTGAACTGTCAAGCAGAGTCACCATGAAGTCATGCTGGCAGAGTTATTGGAGATAAGGAAGTAAATTTGGTCTCTTCACAGGGAAGTGGTAAGACCATGACCCTATTAACCCTTTGATGAGGTGTTTAATTGTAGCCTTGTTCCCCTAG
Seq C2 exon
GTATTTCCCATGACAAGCTCTGGGGCTCCAATCAGTGAATACCCATTCATAAGGACAGGTTTGCTGGGATTTGTTGGTCCTGGGGGCCTCGTCTTTGTTGTGGGTAAGATGGACGGCCTGATGGTAGTGAGTGGACGAAGACACAATGCAGATGACATTGTGGCCACAGCCCTAGCTGTAGAGCCCATGAAGTTTGTCTACAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288:ENSRNOT00000020634:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.4=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(9.0=61.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTGTTCAGTGAAGCCGG
R:
TTCCTCTGTAGACAAACTTCATGGG
Band lengths:
342-1947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]