BtaINT0049369 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47087332-47095693:+
Coord C1 exon
chr13:47087332-47087529
Coord A exon
chr13:47087530-47095601
Coord C2 exon
chr13:47095602-47095693
Length
8072 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATC
5' ss Score
4.8
3' ss Seq
TTTATAATTTGTATTGATAGGCA
3' ss Score
5.89
Exon sequences
Seq C1 exon
TTCAACAACCAGATCCAAACCAGCCAAAGCCAGAGGGAGCCCAGATGTTGGCGATGCGTGGGGAGCAGCTGGGTGTGGTTACAAATTGGCCCCCATCTTTAGAAGCAGCGTTACAGCGATGGGGGACCATCTCACCAAAGGCCCCGTGCTTGACCACGATGGACACGAACGGAAAACCTCTCTACATCCTTACTTACG
Seq A exon
GTAATCCTTTGAGGCTTATCCATCTTTTGTCTGCTTGTGCCTGCACACAACTGCCACTTTCAGGGTGGAAGTTTATATTTGTGTTGCCTTATGTTTCCAATATGGAAATAAATGGAACCCAAAAGGAAATATTGGATTGGCCAAAAAGTTCATTTGCGTTTTCCTGTAAGATACTATTGAAAACCCAAATGAACTTTTGGGCCTAGCCAGTATAGGAAAATTATTCGATTTGAATGTGAAAAATTATTATTTGTTAATGATTTTTAGTAAAAACCAGAAAGTGATACAAAAATTAGTGACTATAACTCTAATAATAAGATGTTGGATTTTATATCTTGGAATGTATATTAAATTAATGCTTTGAAGAAGGATTGGTAGTTAAAGAAATGAAACAAGAAAGAATGTATATAGAACTCTTTGACATGCATCACTTAGAAGAAACAACATTTGTTTCCACAGTACTTTTCTAGCAAGCAAGGGAAGCAAACTTTTGCTCTTTATTCAGTATGATTAATGCAGTCCATAAACTTTGGGAAATAGTTAACTATACAAGAGAGATCCCTTTCTCTTTGCTTCACAGATAAGGGGCCACGGAGAAAGCAAATTGTCAGGTCATTTTCACACACTCTGGTGCAGCATTGCAAAGAAATCAGCTTCATAACTAAAAGACAAAATGGCTTATATCTGCACGTGTGAGGTTACATTACCATTTTTAACTTCTGGTTTTATTTCTATGATAATAATGCTCTTCTAATTGCAGGTAGGAAAGAAACTGTTTTCTCCATTAGCAGTGGAGCTCAAGAGCCAGGTGTTGTGTTAAGTAACATAACCCAGCTTTTAGTGGGGCCCAGAAGGCCCCCACTGTAGACTTCATCATTATCCTCTGCATCTCATGGAAGGAAATGGGATTCAGGAGCGTATGTTTTCATAGTCTCAATTTTTTTCTTCTAGCTTTGTTGGGAAATTCTTAGTGGATAAAGGGTATTTTACCCATAATGGGACATAGGATTGATTTTTTTTTTAAATTATACTCTTAGAAATAAATTTTAGTCAGAAAGATAGAAGACTTTCCTGTCTGACCCTCGTCCCTGGCCAGGTTCAGACCAGGAGCTGATTGGGTACTGTTTTCCAAGCATCATTTATTGAAAGACTGTCCTTTTCCCTTTCTTGGCTGTTTTGTCATACATCAGTTGACATATATGCATGGGTTTATTTATGGGTTATTCTGTCTCATTGATCTATATGTCTGATTTTGTGCCAGTATCATACTGTTCTTATTACTGGTAGTTTTGTAATGTCAGGGAGCATGATGTCTCTAGCTTTGTTTTTCTTTCTTAAGATGACTTTGGCCATTTGGGGTCTTTCAGGGTTTCATACAAATTTTAAAATTGTTTGTTCTATTTCTGTGAACAGTGCTGTTGTAATTTTGATTGGGATTGGATTTAGATTGCTTTGAGTAGTACGGATACTTTAACACAACTGCTTTTTCTAATCCATGAGCACAGAATATCTTTCCATTTGTTTGTGTTATCTTCAGCTTCTTTATCAGTCTTACAGTTTGGTTTTTTTTTTAAGATGCAGATTTTATGGGGCTTAATTTTCATTGTGCTTTTTGTAGTGGGTTTTTTTTGTTTGTTTGTTCTTTGCCACACCATGCGGCACACTGGATCTTAAGTTCCCAGCCAGGGATCGGACCTGTGCCCCCTACAGTGGAAGCACGAGGCCTTAAACCACCAGACCTCCAGAGAAGTCCCAAGTCTTAACAGTTTTGAATGTACAGGTCTTTTACCTCCTAATTAAATTTATTTTGAGGAATTTCTTCTTTTCAATGCTGTTGTAAATAGGATCTTTTTCTTGGTTTCTCGTTCTAGTAGTTTATTATTAGTATATAGACACAGCAGTTTTCTGATAACAGCAGTACATTGATTTTGTATTTTACTACTTTACTGAATTCATTTATTACTCTGTTTTTTCTGTATTGTCTTAAGGTTTTCTATGTATAATGTCATGTTATCTGCAAGTAGTGACAGTTTTTCATCTTCCTTTTCCAGTTTGAATGCTTTTTTTTTTTTTTTTTTGGCCTGGCTACTCTGGCTAGGACTTAAACAATACTTTATTGAATAAACATGGCAAAAGTGAGCATCCGTGTCTTATTTCTGAATCTTAGAGGAAATGCTTCAGGTTTTCATTGTTCAGTATGCTATTAGCTGTGAATTTGTCATCAGATCAGATCAGTTGCTCAGTCGTGTCCTACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCGTCACCAGCTCCCGTAGTTCACTCAGACTCACGTCCATCGAGTCAGTGATGCCATCCAGCTATCTCATCCTCCGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAACACCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCTTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCACTCAGCCTTCTTCACAGTCCAACTGTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCCCACAAAGAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAGCTTTTTCACTCCACTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTATCATCTGCATATCTGAGGTTATTGATATTTGAATTTATCATATAGGACTTTTATTTTGTTAGGTATGTTTTCTCTGTACCCACTTTGTTGAGAGTTTTTATCATAAATGGATATTGAATTTTTAACATTTTTTTCTGCATCAGCTGAGATGGTCATATGATTTTTATCCTTCATTCTGTTAATGTGCCATATTATTCACATTAATTGATTTGTGGATGTTGGACCATCCTTGCATTTCTGGAATAAATCCCATTTGATCATGGTGTATTATCATCTTAACATATTATTGAATTTGGTTTGCTAATATATTGTTGAGGATTTGTGCATTTGTTTTCTTCAGACCTCTAATTTTTTCATGGTGTCCTTATCTTGTTTTGATATGAGGATAACACAGGCCTTGTAAAATGAGTTTGAAAGTGTTTTCTTGTCTTTTGTTTTTTGGAAGAATTTGTAAGACTGCTTTAGTGGTGATGAATTTCTTTAGCTTTTAGCTTGTCTGGAAAACTTTATCTGTCCTTCAGTTCTGAATGATAACTTTGCTTGGGTGAGTGTTCCTGGTTGGGAATTTTTTTTCGTTCTCCCTTCTAAATCAGTTAAGAACTGTTGTATTGTCTTTAATTTAAATCAGCAATTTGCTGTTTATTTTTTCTACTAGAAGAGTATTTCTAGAACTTTGCCAAAGTGTGTTGTTGCCTTTTTCAAATTGTCTGTTGTAAATTGGCTTTTGTATGACTTTATGATGATACCAGCTTTAATATTCCAAACTGAGAATGAAATTGAAATTTTTAAGAAAATATAATGGTGCTAATTGATTGTAATTGATGTGTTAGTTTACAACACATTGATTTTTTGTTTCAGTTAAAACAAGTTGATTGTAATTGTTTGTTCAGCCAAAATAATTTCCTAACATTGTTCACAGTGGGAGAGGGAGAGGGTGGGAAGATTTGGGAGAATGGCATTGAAACATGTAAAATATCATGTATGAAATGAGTTGCCAGCCCAGGTTCAATGCATGATACTGGATGCTTGGGGCTAGTGCACTGGGACGACCCAGAGGGATGGTATGGGGAGGGAGGAGGGAGGAGGGTTCAGGATGGGGAACACATGTATACCTGTGGCGGATTCATTTTGATATTTGGCAAAACTAATACAATTTTGTAAAGTTTAAAAATAAAAATTAAAAAAAAAAGAAAAAAAATAAGTTATAGTGGTTTTCACCTATGCTTTTCAGCTCCATTAAAAGATTGATTTTATTTAAAAAAAAGAAAGAAAGAAAGAAATCTGACAGCACAAAGTATTTGTGATTTCTTTAGGAAAAAAATAACTCCCTGAGTTATTTCTAATGGCTAGTAACTCTTTGGGGAGAAAATACAATCACCAAATAAAAACCAAATAATTGTAAAGTAGACAGTCTTGAGGAGATAGAGTTAAGGAAGGTGGAAGAGGTGCGTGAATAAAATGTCACAGTAATTACTGTTAGTACTCAAGAAGTAGGCTCAAATGAATACTGTAATTTTGTGCTTTTTACAGCTTGCTTAATTTGCTGTTAATAAAACAAACATTTGTTGAGCACATACTGTGAGCCAGGAATGTCTAGGAATTACAGGAATCAGAAACAGTGGAAAAGTCCTCTTTGTTCCCTAATCACTATGGGGGGAGACAAGTTGATAAATCCATTGGTAGGAAGACAGGAGCAACCCTAAATTGTGTTGCTACAGAATCCAATATGAAATAAGACAAATTCAGATTCTTTTCATTTAAACTGTATATTAATTTAGCTTTTACATTTTAAATAGGAAAGAGATTAGAACAGAGATTACATTTATAGGAAATAGTTCAAATTGTTGTTATCTTTACTATACTATTGTTTCCCTGGTGGCTTAGCTGGTAAAGAATCCGCCAGCAATGAGGAGATTCTGGTTCGATTCCTGGGTCAGGAAGATCTTCTGGAGAAGGAATAGGCTACCCACTCCAGTGTTCTTGGGCTTCCCTCATGGCTCAGATGATAAAGAATCCGCCTACAGTGTGGGAGACCTGGGATTGGTCCCTGGGTTGGGAAGATCCCCTGAAGAAGGGAATGGGTATGCACTCTAGTATCCTGGCCTGGAAAATTCCATGGACAGAGGATCCTGGCTACAGTCCATGGGGTCACAAAGAGTAGAACAAGACTGAGACTTTCACTTTACTATTATTGCAAATCTCTTAACACTTTGACTGCTTCTGAAAGGTTATAGAACCTAATGTTATAAAAGGCATTTATGTGTCCCAAGAATTCATGTTAGGTTTTAAAAGTCATTTTGATTCAATCTCAGACTGTTTGCTGTCACCTAGACCTGCTGAGAAAATGTCTGGCACTGAGAGGTAGGCAGGGATTTGAATCTGCAGGTTCTTCAAAACTGGTCATTTTTCTTATGTTCTTAAAAATCTTTTTAATCCTATTTTGGAGTGTTTTTTCCCCCAGCGTTCAAAACTTTAGTTCAAAATTCTTACCATAATCTTTATCTAAATTCAAGGGTTACTGTCTAAAAACTGTAAAACTCTGAAGTTAGGAAAAATTAAAGTTGAGAAACTTAGGACACAGGGAAGGAGGGGTATCAGACCCTACAGAAGCCATCCTAAGTAGCCTTTATGTTTTTTGCAATCACACAAATCACTTATGATTATACAGTGGAAGTGACAAATAGATTCAAAGAAAAATTCCATGGACAGAAGAGCCATGATCTGATAGAGTTCCTGAAGAACTATGGACGGAGGCTCGTGACATTGTATAGGAGGCAGTGATCAAGACCATCCCCAAGAAAAAGAAATGTAAAAAGGCAAAATGGTTGTCTGAGGAGGCCTTACAAATAGCTGAGAAATGAAGAGAAGCTAAAGGCAAAGGAGAAAAGGAAAGATATATCCATCTGAATGCAGAGTTCCAAAGAATAGCAAGGAGAAATAAGAAAGCCTTCCTCAATGATCAATGCAAAGAAATAGAGGAAAACAATAGAATGGGAAAGACTAGAGATCTCTTCAAGAAAATTAGACATACCAAGGGAACATTTCATGCAAAGATGGGCACAATGAAGGACAGAAATGGTATGGACCTAACAGAAGCAGAAGGTATTAAGAGGTGGCAAGAATACACAGAACTATACAAAAAAGATCTTCACAACCCAGATGAGCACAATGGTATGATCACTCACCTAGAGCCAGACATCCTGGAATGTGAAGTTAAGTGGGCCTTATGAAGCATCACTATGAACAAAGCTAGTGGAGTTGATGGAATTCCAGTTGAGCTATTTCAAATCCTAAAAGATGATGCTGTGAAAGTGCTGCATTCAGTATGTCAGCAAATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACCACACAATTGCACTCATCTCATATGCTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGACTTCAACAGTATGTGAACCATGTACTTCCAGATGTTCAAGCTGGATTTATAAAAGCCAGAGGGACCAGAGATCAAATTACCAACATCCGTTGGATCATTTGAAAAAGCAAGAGAGTTCCAGAAAACCATCTGCTTCTGCTTTATTGACTATATCAAAGCCTTTGACTGTGTGGATCACAAGAAACTGTGGAAAATTCTTCAAGAGATAGGAACACCAGACCACCTGACCTGTGTCCTGAGAAATCTGTATGTAGGTCAAGAAGCAACAGTTAGAACTGGACATAGAACAACAGACTGGTTCCAAATTGGGAAAGGAGTACGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACATATATGCAGAGTGTGTCATGAGAAATGTTGGGCTGGATGAAGTACAAGCTGGAATCAAGATTGCAGGGAGAAATATTACTAACTTCAGATATGCAGATGACAGCACCCTTATGGCAGAAAGTGAAGAAGAACTAAAGAGCCTCCTGATGAAAGTGAAAGAGGAGAGTGAAAAAGCTGGCTTAAAATTCAACATTCAGAAAACTAAGATCATGGCATCTGGTCCCATCACTTCATGGCTAATAGATGGGGAAGCACTGGAAACCGTGAGAGACTTTATTTTCTTGGGCTCCAAAATCACTGTAGATGGTGACTGCAGCTATGAAATGAAAAGATGCTTGCTCCTTGGAAGAAAAGCTATGACCCACCTAAATAGCATATTAAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCATCTAGTCAAAGCTATGGTTTTTCTAATAGTCATATATGGATGTGAAAGTTGGACTATAAAGAAAGCTGAGTGCTGAAGAATGGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAATTAGTCCATCCTAAAGGAAATCAGTCCTGGGTGTTCATTAGAAGGACTGATGCTGAAGCTGAAACTCCAATACTTTGGCCACCTGATGCGAAGAACTGGCTCATTGGAAAAGACTCTGATGCTGGGAAGGAGAAGGGGACAACAGAGGATGAGATGGTTGGATGACCTCACTGACTTGATGGATATGAGTTTGAATAAGCTCTAGGAGTTGGTGACGGACAGGGAAGCCTGGTATGCTGCAGTCCATGGGGTTGCAAAGAGTCGACATGACTGAGCTGAACCACACAAAGCAGGACTCACTAAAAAAGGAAAATATGTGTCATTTTGAACAACATAAATTAGTGGTAACTCACTAATGCCGTAGTCCCTCCCGTGTTTTACTCTCTAGAAATCCTCGTCTACTTCTGTGATGATAGTTAAATTCTCTGTGGCTTTGCTGTAGGTTCTTAGCACCCTAGGTGTTTGTATTTAATACCTTATTTTGTTGTTCATGCTGCTCAGATTTTATAAGTCAGAGTTGCTGGCTTTTGTTTCCCATCTGGATTCTAAGGACTCAGAATAACTTGAAAGCTTAAAGTGAAAAAGTAGTACTCTCAATATAGGTTAATTTACATACATATACACAGTAGAAAATGCATGTGTACAATTAATTGTGTCTTTATAATTTGTATTGATAG
Seq C2 exon
GCAAACTGTGGACAAGAAGTATGAAGGTTGCTTACAACATTCTGCATAAATTAGGTACAAAACAAGAGCCTATGGTGCGACCTGGAGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531:ENSBTAT00000015282:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.313 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(6.1=43.3)
A:
NA
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development