BtaINT0049371 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47101669-47106556:+
Coord C1 exon
chr13:47101669-47101779
Coord A exon
chr13:47101780-47106432
Coord C2 exon
chr13:47106433-47106556
Length
4653 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CTCCTTGCTGCTGTCTCCAGGAT
3' ss Score
9.58
Exon sequences
Seq C1 exon
GTGGCACTGGTGTTCCCCAACAACGACCCCGCTGCCTCCATGGTGGCTTTCTACGGCTGCCTGCTGGCCGAAGTCGTGCCTGTGCCCATTGAGGTGCCCCTTACCAGAAAG
Seq A exon
GTAAAGAACCCTTCTTTCTGTTGAGGCCTCTTGGCCATGCTGGAAGGTTCTGTTGTGGGGTCGGAACGTGCAAACAGTGTCTGTAGAGCGTTCCTCTCAGCAGCATGTGTATCGGAAAGGCCAGGGCTGCCTACCTTGTCTCTGAAACTCTGTGCAGTTCTCATCGGCCATCCCAGCCCTGATTCCAGTCAGCGCAGTGGCCAGAGTCAGCTGCTGCTAGTGGTGGTGCCTTCCGTGTGTGAGCAGGGTGATCTGCCGGAAAGCCAGGCGTTCCAGTGTCTTGTTTTTCAGTGTCACTGTGCTAGAAATCTGAGTAAATGGTGGACTTTTTACTTATTTTTCAGGGGTGGCAGTTGTCGCATTTGTTCGGGTGTTAGGATGTTGTCAAGTCCCAGGTTCAGCTATAATTTGTTGAATCTTATTCTAAAAGAAGAATAAGTAACTTATCTTGCTGTCACAGTTGTAGTGTAGTCCAGCGTCAGAATCCTACACAGCAGCGTGTGTCTTTGTCCACGTAAATGACTGCTTCTTGCGCCGTAGACCTGCAGTAACTTTGGAAGGGAGGGTGAGGAGAAGAGGCTCTGCTGGGGTTGGTGCTGATGGTCCTCCAGAGACTCTCTGGTATTGTGGACGGAGACGGAGCCCATGGCTGTGGGGTGGTTCTGCCACTGCTTGTGTTACGGCTTGTGCCCTGGGGCTCCACCCTGGATTTATCTGGCATCGTTTAGCACATCATCGTGAACAGACTGTGAGGTGACTCTCCCAGCTCCAAAACGTAGGGCTTTCACGTGCTCAGGCTGAGTTTCCAGAGAATCTTCCAGCTGTCTTTGTGGCTACTCTGATATAAAAATGGGGAAATGCCTCAAGGTCTGCTCATGGTGTGTGGGTGCCTTTGAAACTCTGCTCCTGAGTTGGAAGGGAGAACATGGGGTTACTTTAGAAAATGATTGGGGAATGGTTGCTGTTTCCATTTCCTGGGTACAAAATATGCAAGCTTCCTACTTGGCCTCCTGGGTGCACTTGCAAGGAGGGCAGGGCTGCAAGTGGCTCTGGAAGTGGGGTGAGCCCTGCAGCCCTTGACATCAGAGCCCCTTCTAGTGGCCTGAGGAGAACCCCGATATTTGCAAGGGTTTGCCTCTAGCATTCCTGGGGTATAATACACAACCAATAACGTGCTTCCTCATCTCCCTGAGCCCTGTGACCTTCACAACTGACAGGGAATGCAGAAGGGCTTGAAGATTCCCCGAGCAGTAGCCATGGTCTCCCCTGTGGTTCTCTGGTGGTGTTGCTGATCTGGGAAGGTGCTCAGGTGTGTGATGCTCCTTTTTAATTGACACCTAATGCAGGGGACTGGGGTCCTTTGGATTCTCTGATGATAATCAGGAGGGATTTGTAGGTTTACACGTGGAGACACAGATTCTCCATGGGCACTGCAGTAAGTGGACCCCTGAATGTTTATCATTGTGAGTGGCAGTTGTTGTTCACTCATCACATGCAGAAAGTATTTGTCTACTTTATGTCTAGAGCCTCCTGTCTTCCAGACCAAGGCTGGTTTGCAGAGGAAAATCACTTGAACGAAGAGGCACCTGCCTCTGCCACATCCTGGCCAGGGGTTGCTGAGTGAAGGCTGAGTGTCTCACCTGCATCTGTTGGGGTTCCTGAGACTTGCCTGTAGCCATCATAGGTGTTCCTGGCTGTGGCCTGCCACGTGGCTCTGTCTCACTCATCTCCCAGGCGCATCAGACCCTCAGATGGTCACTGTTAACCTCAGGACCGGGAACCCTCTCTCAGAAGAAAAAGCTGGGGTTCCTTCCTGGCCCTCTCTCCCTCAGAACACGCCTGAAAGGACAGAACCAGGAGATGACTCACAGGCTGTCCTGAAGCCAGAAGCTGTGAATTGGGCTCAGTCTGTGCCTTCAGAACAGAGTGTTTGTCCTCAGAAAACTTTTCTTACTTTTAAATGAAGAATGCACTGGCTTGGTTGCCATAGAGCACGAGGTGAGAGGTGCACAGTGGCACTGGTGATGAAGTTTTGAATCTTCTAGCCACGAGTCCTGTGCACACTAACCTTGTCTTAAAGGGCCTAAGGAGAACCAGATTTTCCAAAGTTTGAGTGTTGTTGAGCTTCACAGAACAACTTGGTCCCATGTGTATTTCTTTATTCTTATTCTTGGAATGAGGGGTGAAGGCTGGTTTTTCACTCGAGAAGTTCATAGTAGTAGAAAGGGATATCCCCCTGGGACTGTGCCACAGTGGGCAGGTGTGGACGGTGGTTGGCTTCTCCACCCTCTTGAGGGTGCTGAGCTGGTCTGTGAAGGCCAAAGGACAATAGAGTAGACCTGTGGGCTGGTGGGAGCTGTGAAGCCAATTCCCATCTGCCAGCATGGGGAGTGGCAAGGCTATGCCAGAGGTGAAATTGTGCATTCAGTTCCGTAGACCAGAGACCGAGTGAGCCCTGAGGCCACAGGAGTCCAGCCCGGCAGCACTTGGCGCATCAGCATCTGCCTCTGGACTCAGAGGGAGCTCGCTGTCCTGCACCAGTGCAGACTGTCCATACCTTAGAATCTAGCACATGACCCACTTGCTGAGAAGCTAGCAGTTTGGGCAGACAAACATCAAAATTGGAAGAGTACCAGCTAGTAGTTTCAGGGCCACAAATACAGAGTTCATGAAAGAGGGCTTCCATATACTCACCTCACATTTACTAGAGAGAATCCTTCTCATGAGTATGGCTGATGCTCTCTGACTGGGAGACTGAGATGGGACTGGGTAGGGGATGGTCATGTGCCACGTTTAATGCTGCTTGGGAGGTTACCTGTCACGGACTGTGGGTGTGGAGAGACTGCCTAGCAAGTGATGACACACATCAGCTCTGTTGGAGAAAGGATGACAGTGAGAGAGAGGTTTTCACTCAAAGGTGGTCCACCTTTTCTTCCACAGCACAGGAGAGTTTGTGAGATTTTGTGGCCCTATAGCTGAGCTCTACAGAGGAAGGCCCCAGCCAGCACAGGCCAGAAAGAGCTGTTCCAGGGAAAATCGCACAGGCAGCATGGGAGAGGGGAGCGCTCCAGCCGCAGGACAGTGGTTCTCATGCCTCCTGAGCAGCTTCTGTGGAGCTTTTTCCGCACGGTGGTGGTGTGGGGGTGTGGGTGGGTTCCCAAGGATCAGGCTCAGGGTGCTGACCCGGAGTCCAGGAGAACTGACCTGTGGAGGGCTGAAGATGGAGGCTCTGGGGTCAAGCTGGGCTTAACTTCAGGGGTCCAGGTGTGTGAAGGAGACTCTGGGGACCCTCTGAGAGCAGGCAGCGGGGTCTTATCTCAGCCCAGTGGGCAGGCAGGGCTGGCTCTGCGAAGTGGGCATGCACCTGGACCTCTGAGTCGAGTTTCCAGACCAAGAAGATGCTGAGGAGCAGGTGCAAAGCTGAATTTCATGGTAGCCACGGATCCTGATCCTGGTTTCTCTCAACCTCTCCTCTCTGTTTTAAGGTCTTTAGGAGGAGATGTTAGAAATACAGGACCTAGGGGACAGCAGGCCTCCACTGTGAGCCCTGACAGGTCTGACAGTTGCCCTGGGAGCTCCCCTGAGCCACTATGAGTGCCCTGTTTGTAGGTGGTCCCTGAAAGTTCACTATCACAGAGAAGTGCCTGTCTGTCCCTGAACCTGGCTGCACAGCCATCTCCCTGCCCCTGGCCTGGTCCAACTTTTGATGATGTGACGCCCACATTCACAGTGAAGTGACAGATTATATAATTCTCTTTGAAAAAGCTCTACTTGAAGGAAAAGTCTCACAAGGGTCCTGGGATGGGAAGGTCCCCATGCGCCAAGCACCAGGCTGCCTCCCCTTCTTGGGGCTTCAAGGCCATGTGGAGGCTGGTCATGCAGGGTTCCTTATAGAGAAGAGCTTGTCAGTCTGCAGTGAAATGTGGGAGCTAGGCACTGGGAAGATGTGGTTCTGAGATGTTGATGCTGCTGATTTTACTGCAGTGGGAAAGAAGGAGCTGATGGCCTCACCGCAGTCCTGATGTTTCCCTTCCAGGAACACTGGCTGCTCTACAGCTTTGTTTTCTGAATCATAGCTGGAGGGAGTGGTGGGAGTAAGGAAAGTGAATTAACTGACTTGTGGGCAGCTGGGTGCTTGGGATGGCGCCACCCAGGCCTGCCTCTCCCACAGTGTCTGCTCCCAAATGCTGCTGCTCAGTCCATGCGGTGGTGCCCTCACTCCATGCGGCGTGTTTGTTTCCGTGGTGGGCATGGGTGTGATCATAGACTTCTTGGGGTCAGTGTCCTGACCAGAGGCATGTTCTTGGATCCTCTCTGTGGCCCATGGTCATGGTGTTGTTCAACCAGAGGGGAATGAAACGAGACCCCATGAGCGCACCAGCACACACCGAGCTCCCTCTCTTCGTCCCTCACAGCAGGCCAAGGGGATGGTGCAGATGACACCACTGAGGCCAAGCTCTTGCCCTGTCCAAGGTTAGGCAGCGGGCAGAGAGCATAAGGTTTGGCCCCCACCATGCAGACGTCAGCCGAGCCCTGACTCTCTGATTGAGCCTCTGCTGAGGGGTTGGTGCCATCCCAGGGTAAGACCATGCTTTGTCGGGAGAGCGGCCATCACCTCTACTCGTGACCCTATCTCCTTGCTGCTGTCTCCAG
Seq C2 exon
GATGCAGGAAGCCAGCAGATTGGGTTCTTGCTTGGAAGCTGTGGGGTGACTGTAGCCTTGACGAGCGATGCTTGCCACAAGGGGCTGCCAAAGAGCCCGACGGGGGAGATCCCGCAGTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531:ENSBTAT00000015282:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development