Special

MmuINT0049607 @ mm9

Intron Retention

Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9562360-9567200:+
Coord C1 exon
chr13:9562360-9562470
Coord A exon
chr13:9562471-9567076
Coord C2 exon
chr13:9567077-9567200
Length
4606 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTTCCTTGGTCACCTTTCAGGAT
3' ss Score
9.74
Exon sequences
Seq C1 exon
GTGGCGCTAGTGTTCCCCAACAATGACCCTGCTGCTTTCATGGTGGCCTTCTATGGTTGCTTGCTGGCTGAAGTTGTTCCTGTCCCCATTGAAGTGCCACTCACAAGAAAG
Seq A exon
GTAAAGAACTCACTGTTCATTAAGCTCTATTAGAGGGAAGTGTCAGGCTCCATGACTGGGTGAGAATGTGTAGACTACAGTTTTGTAAATTACTTTTTATCTTTGCTGTGCAAGTTCAGTGACATGTTCTTGCTGTCTCTAACACTCAGACCAGATTTTCATTAGTTGCATTAATTTGTGAGAACAGTTATTCACACATACCCAGCATGTCTCATCTGCAGGTGTGCTCCTCCGTAAGGTGAAGCTTCCGTTTATTTGGTAGCATAGCATGGCCCTGTCTTATCAAGTCCTGGTTCTGATTGGTCATATCTTATTTTCAAATTAAATGTCTAAACTTGCTCTTATCTTTATTGTATATTCCAACTGTGGGGCCAGTAAGTAGCTAGTATTGTATAATTTTGTAATCACCAGCCTTATTAGCAGCCCCTAGTAGATTTGCTGTGTGTAGTTCCCAGGGCTGCAGTAGCTTTGCTGCTGGTGTTTGTAGGGATCTCTCCCCCATTTCTCAGGATCTTGTCCTCACCTGTTTGTTCACCTGTTTGATAAGAAAGCCATGCCAGCAGGTGCGAAGTAACCTCACTGTGGTTTTAATTTGTGTTTCCCTAACAGTTGTGCTGAACTTTCTTTCCTGCCTGTGCATGTATAACATAGCAGCCTGTTGGCCTGAGCAGTTTTCTTACTTTTACCTGACTCTTCTCCCCGGTTACAAGTGAGATAACAGGATTGTATGAGTAAATGAGGAGGAAGTACGGGAAGGCTAATCCTTGCACCCACCTGTTCAGTGGCCACTGGAGCTCCTTAAAGGTCCTACTCAACAGTCCTTGTTCTTAAGCCTGAATCTGGTTGAATGCCTTAAGTAACAGCTTGCTTTTATTTATTCAGTTATAATCCTGGTAGTGAAAGGGAAACATCTAGGCAGTTTTATCAAGAGAAGTTGGTGACCCAACAGGAGAGAGGGACAAGAAAAAGCAGTCTCCAGCCTTGCCAGTGACATCAGGAAAATGATTATCACTATCTTGTGGTATCTGAACCTGTATGTTTTTCTGTCAGCCAAGTGGATTTACTAACCTAAAAAGTAGGTTTCGCCAAGATGTCCTTGAGGAACAAAGGTTATCCACAAGGGTGATAGTCTGGGTACAAAGGGATAGCAACCGCAAAGACCCAGCCAGGCTGACAGTGTGAAGCCTGTGTATGCCAGTGATGACAGGACAGAACATGCATACTGGGCCAGACCAAGGTCCTGCTGTGACTTGAATGGCTGCATAACAGCCACCCGGGTCTGGTGCTGCCTGAGAATTTTTGTATGCTGTCAAGGCTATCTGGCTTGCTCCAAAGAGCTCAAGTCATAGTTGATTGGTTGGTTGTGTTGCTAAATATTTCCAAAGTGGGCTATGTGGCACTTGCTCTAATCCTAGTAGTGGGGATACTGAAACAGATGGGTTGGGCTCAATGAGGCCAAAGTGAGCTACTGAATGAAACACTGCCTGGAAACAAACAAAAGTTTCAGATGAACCTCTAGAGGGAATAATGTCAGAGTCTGGTATGTTTACCGCTTTAGGTGAACAGAATGGTATTTTGAGAGAGGCACTCAGTAGACCTGGGATCTCGAACTGCAGGAATTGAGGGAGAAAGAGCAGTAGAGCTGTAAAGGGCTACAAGGAGATGAGCAAGTGCCTGCCAGGGTGAGGAGGGCCTCCTCCAGAAAAGGCATCTTTTAGCTGACGCGTCCTTGTATGCATAGTATGGCAGGCACCTTAGATTCACTTTCTTAAATGCCAGTGTATGCTATGTGAGTGTTCCTTAAAGTATATAGACACACAAATATGTGTGTGTGTCCTATGCTGGGTTCCTTAGTTATAAACATTTTTAAGAATATGCACTGTATAGTGAGGAAAATTGATGGTGCCAGAATGATCAAAAACTTGTAGTTATTAACATTGGATGATCTACACGTGAGAATGCTTTTTCTTATCTCTGTGTATGCTTGAAGGTTTCCATTATAAACACACCTAAAATTGATAATAGACAAGACATTAATTGACCTATCTCAGTTGTGATGAGGAAAATTTGATATGATGTCAGGAGTTACTGCCATAGAAGCCACACAGAAGGACTTTCTAAACAGTAACATTATCTGTTATCCTTTTCTATCTTGGAGAAATTTTTGGAAATTCATAAGAATATTTGAATTCTAGTTTGGTCTAGCTTTTCTTAATCAAGGGGAAAGTTATAAACTTTGATTGACTGCCCTTAATGTGGGGGTGGGAGTAATGGTGATACAGCCCACCTCTCCTCCCCCTGTATGTGTCTACATGTCTGCTTTTACCTGAGAAAGAATCTACCTGTTAGCCATGCTTATTTTTAGGGGCAAGGTACTTGGCAAATGATGTCAAAGTCCGAGTATGTGTCTGGGAGGATTTAGCTCATTTCACATCCTGAAATACAGTGACTGTTTCACTGGTTTGGCCTCTCATCCAGCCAGATAGAAGCAGATACCTTTCTTGAGACCTTATAGACCATAGCAAGTCATTGCTGCTGTGTGACTTGTTATCCATTTATCTTGTTCTTGAGTCAGAAGCAGAGACTGTGAGGACCACTAAGTTCTTTTCTTGACCTTTGTTTTGATCTAATCTGTAGAGTTCATCACCCTATCCACCATGTTGGTTGAATGTTCGATGTAGAAGGATGTAGATGAAGCTGGCTCTGGCATGTGTGTTTGGTGTCACCCCAAGGGGGATGTGAATGACCTAGCAGAGTTTGTCTGAAACTAATATGTAGCCCCTGGGAAGTTACTTTGTACCCTAGAAGGTGCAATTAGAGACAGCATTGAATGCAGATGGCAGTCTTGACATGTTGGTCTTTCTGTTACATGGCCTTTGCCCTTTTATACTTCATGTCTCTCTTCCTTTTCCTTCTCCTCTTCCCCTTTCCTTCTTCCCCCTTTCCCCTTTCTTTCTTCCCCCTTCCCCCTCCTCTGCCTCCCCCTCTTCTGCTGCCATTTTCCTCTCTCACCTCCCCCACTTCTCATGTTATTTCTATTTTTAAAAAATTCTCTCAATACTGGGGATTGAACTTACATGCTCACCATATGATCTTTCATCTTAATTATGTTTTTAGCTTTTTAGGGGTCTATTTATATATACACAAATTTGTTGTTTGGAGGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCACACACACACACACACACACACACACACACACACACACTTGCACACATGTATACATACTCGGAGTATAGGGAAGGGTGGACTCCTGGCTTTAGGTCCCAGATCAGAGTGTCATAACTTTTATCTCAGTATGCCACAACAGTCCCTCCCTACTGGGAAACAGCTGTGATGTATGTCTGACTCAACAAGGCATTCATAAGCTTGAGAAGCAGCCCAGTTTCTGCTGCTAAAAACCCACCTCTCCTGCCTGCCTGCTTCACCTCCTCAGAGGAGTAGTATTTGATCTTGACTTTACTTAAAAACAGTATTGCAACAATAAATACTGTTGCAAATAAATAAATCTGCAAAATGGGGACTGACCCCATCTAGTGAGGGTCATACCACCTCTCCCATTGCAAGGTTGTGTAAATTATGCAATTGGTTTGTTGGCTATTACCCTGAAACAATCCATATAAGGAGACTATAGCTTTTAAATCTACACTTGGAAAAGTATTATCTAAACACTTAGCAAACAAGAGCTTTGAAATCTTAATGCTGATGAATACCTAGGTGACAGAACTTTGCTTTACCCAGTGATTTCCTGGGACAGACAGGTGGGAGATTCAACAAGCTAGTCTTCCTGAAAGTTGTTCATAGAGTCAATGTGTGAGCTGGGTGTAGCCTGGACTCTTCTACACCATGATATGTTCTTAGTTCCACAAATGCTGGGTACTTGGAGATTCTGATTTTACTTTTCAGTTCATCAGCATAGTGGAGGAGCTGATAGGAGTAAAGTTAAATCTAGGTGTCTTGACTGCTTGTCTTTTGTTTTCGTGAGAAGCAGGCTGCATACAGGGCAATAAAACTCACACAGGGAGACAACTCCTGAGGCTGTTGCAGACAAGGACAGCCCCATCTGTGACATCCACTGAAAGGTGACATTCAGTCCTGGCAGCTTGGTGTTTTCCTAGGCTTTCCGTCTCTAGAGTTATCACCCTGTAACCACAGCACATTTTAGTATGTGTTGGTTACTCCATTGATTCGTGATGTATGCCAGATGGGAAAGGTGACCCTGGTTGTCATTACTCTGAGTAAACATCCCTCTTGGTTCTGTACCCTATCTATCAGGTGCGACATCTCTATAACCAGCCTTTGAAAGTGTGAAACCAGATTGTGAGGTATTCCTATGATTGATAATTTCTCTCCACAATAATGAAATCTTAGGATCATTGTCTTTGTTTTTAAAATTTTATATATTTTGACCATTTTCACACACACACACACACACACACACACACAGAGCGTTGTGGGAGAAGGGTCATGGATAGGGCAGTTAATTTCCACATACCCAAGATGAGGCAGTGCTTTGGGTATGAGTAAAGTTTTGTCTTAGATTTTTAACTTTCCTTGGTCACCTTTCAG
Seq C2 exon
GATGCAGGGAGCCAACAGATAGGTTTCTTGCTTGGAAGCTGTGGAGTAACTGTTGCCTTGACTAGTGATGCCTGTCACAAAGGACTGCCAAAAAGCCCAACAGGAGAGATCCCACAGTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-Dip2c:NM_001081426:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.022 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0050123=AMP-binding=FE(14.0=100)

							
A:
NA

							
C2:
PF0050123=AMP-binding=FE(15.9=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000126827f4653A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000055231, ENSMUSP00000097497, ENSMUSP00000126827, ENSMUSP00000131238, ENSMUSP00000133806
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr10:390864-399108 
ALTERNATIVE
HsaINT0048150
(DIP2C)
Human
(hg19)
chr10:436804-445048 
ALTERNATIVE
HsaINT0048150
(DIP2C)
Rat
(rn6)
chr17:63703372-63708300 
LOW PSI
RnoINT0047769
(Dip2c)
Cow
(bosTau6)
chr13:47101780-47106432 
LOW PSI
BtaINT0049371
(DIP2C)
Chicken
(galGal4)
chr2:9976097-9983611 
ALTERNATIVE
GgaINT0100230
(DIP2C)
Chicken
(galGal3)
chr2:9936197-9943711 
LOW PSI
GgaINT0100230
(DIP2C)
Zebrafish
(danRer10)
chr24:27078873-27080972 
LOW PSI
DreINT0057226
(dip2ca)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"