BtaINT0049816 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022715 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr26:42803663-42810227:+
Coord C1 exon
chr26:42803663-42803847
Coord A exon
chr26:42803848-42809838
Coord C2 exon
chr26:42809839-42810227
Length
5991 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTCCTTCCTGCCCCTCCCAGGTG
3' ss Score
10.77
Exon sequences
Seq C1 exon
AGCTGCTTTGCCTGCAAAATCACATGGAAGCCAGAGTGAGGACGAGCTACCTCCAATCCCTGGGCTACTCTGTCAGGGACCTTGCCATTCCCGGCTCGGACTCAAGCTACCAGTGTCAGCCCCAGATTACGTCGAGCCTGGTGACGTTCGTGATCCCCTACTCCGGCTGCGGCACCATCCAGCAG
Seq A exon
GTAAGCTTGGAGCTTCCCCCCACCTCCTGCCAAGCAAGCTTTCTTAGCGAAGGATGCTATGCTTTGGGAATCCTGGGGACCCAGAAAACATGACTGTGGTATAACCAGAACATAATCTGGGTGAGGATATAAATGTGTTCCTTGGTGTCATGATGTGGCTCCAGCCACGTTCAAACAGAAAAAGAAGGAAGGTCAGCGGGGAGTTTTTTCCCACAGTGTCCATCAGAGAGGGTGCCTGGCAGGCTGCCATCAGGTCAGCAAGAACAGTAGCAACTCCCAGGGGCCGTTCCAGGTTTTGAAGGTCCTAGAGCTTATATAGGTTGAGGTTGGGGTGGGTGAGAGGGATGGGTGCCTCCTTCATGGAAAGAAAGCAAGCATATCTTACTTTTAGAAATCTTACAGAAACGCATGGTGGTGCCAGCATATTGCTGACCCCTGGGAGGACCTGTCCTTGGGGTCGGGGTGGGGATGGGGGTGCTAAAGCCAAAACTTAATTGTTTTTTAGTTGCTCAGTCGTGTCCAACTCTTTTGCAACCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAAAATACTGGAGTGGGTTGCCATTTCCTTCTCTGGGGGATCTTCCTCATCCAAGCATCAAACCAAGACAGATTTTTTTTACCACTGAGCCGCCAGGGAAGTCCTTAAGCTTATTAGCTTCACAATACATCTGCCTCCGCAGGTGTCACTTGCTGAGCTGTCACCACCTAGGGTGACCAGCTGTCTTGGCTGACGTGGGGCTTGGCCGATTTTAGCGAGAAGTCCTATGTCCCAGGAAACTCCTCGATCCTGTCACCCTACAAGTGACAGACCCTGAGATCAGTCCCTGTCAAACTCCCCGAGTCCCCCAGCAACAAGATGCAACAAGCCTTCCCTCATTATCATCCCACTTGAAAAGCAGGGAGACTGGGCTTCCAGGAGTCAAGCAGATTGCCTAAGGCTCCTTAGCCAGGTAGGTGGGGGCAAGGCTGACGTCAGACTCTGAGAATCTCAAAAATGTGGCACTGAGTGAAAGAAGGCAGGCACTCCAGATGCCCTGCCCTGTGATTCCATTTCTGCGAAGCTGAGAAATGGAGAGTCAGCGTGTGATGGGCCAGCCTGGTGGGGGAGATGCCTGCAAAGGCAGACGGAGCTCTGGGATTATGAGAACGTCGGGCCTCTTACTGCCATCAGCATGGCACTGCTGGCACTCTGAGAGTTGTTGCACTTAACTTCATGCAAATTTATTTCAAACTCTCCATTCTAGATCTGAATTTTTGAGTGCCACCTAAGTAACCACTTCCAGATCTTGTCTGTCAGGGAACAGTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTGGCAACCCCATGAACCGCAGCACACCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTCCACCCAAACCCATGTCCATTGAGTTGGTGATGCCATCCAACCATCTCATCCTCTGTTGTCCCCTTCTCCTCCCACCTTCAATCTTTCCCAGCATCAGGGTCTTTTCAAATGAGTCAGCTCTTTGCATCAGGTGGCCAAAGTATCGTAGTTTCAGCTTCAGCATCAGTCCGTCCAATGAACACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGGCTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAACTCTTCGGTGCTCAGCTTTCTTTATAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACAACAGCGTTGACTAGATGGACCTTTGTTGACAAAGTAATGTCTCTGCTTTTTAATATGCTGTTTAGGTTGGTTGTAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTACAGTCACCATCTGCAGTGATTTTGGAGCCCCAAGAAATAAAGTCAGCCACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGAGACCAGATGCCATGATCTCAGTTTTCTGAATGTTGAGCTTAAAGACAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTACTCACTTTCTGCCATAAAGGTGATGTCATCTGCCTATCTGAGGTTATTATATTTCTCCCAGCAATCTTGATTCCAGCTTGTGCTTCATCCAGCTCAGCATTTCTCATGATGTCAGGAAACAGACACAGAGCAAATACTTTTATTAGGTTTGTTGTTGTTTAGTTGCTGGATCGTGTCCGATTCTTTTGGGACCCTATGGACTGTAGCCCCCCAGGCTCCTCTGTCCATGGGATTTTCCGAGGCAAGAATACTGGAATGCCACTCTAGGGGATCTTCTTGACCCAGGGATCCAACCTGTGTCTCCAGCATTCGCAGGCGCATTCTGTGCCACTGAGCCACCTAGGAAGTTTTTTATTAGGTTTAGGTCTGCAGCAAATATACAGCACGAAGTGCTCAAATGTGTGCAGTGTGTGTGACACACACGATCAGAGGGTTTGTCAGTCACCAAAGACATTCTACCCATTTGCTGTGTGCCAGGCAAGGGGCCCCAAGGGCGCAGTGCCATGTCTGTTTCAGTCACAAGGAACAGTGATGGAGGCAGGGGTGCTGATTAGCTAACCGGGTGAGCCCGTGGGCGGCGGATGGGTGCCTGGGCCCGAGGGTCTGCAGTCACCACTGTGGCCACCCAGCTCCCATAGGATCTCCTTCTGGGAGGATCTGAGTGGGTCATGGAGGCCTAAGTGCAGAGAAGATGAGTCACGCCCTGCAAATGCTCTAGTCCACCTGGCTTTTACATTTCACAGATCAGTCATATTGGATTCTGGTTTGTCCTGAGTTAAGTCAGTGGAAGTTGGTCCACCACAGGCAACCACCCCTCCAGGCTCCAAATGTACGGCCTGGAGCCTCTGATGTCTGGGCTATTCCATCTGTGTTCCTTCATTTCTGTTAGGAGATGCCAAAGCCACAGGGCAGCCCTGGTCTTCTAACCTGGATGGTCGTGGGTCGCGTAGGTTAATTCTTATTCCTTTGCTTATTTAAATACCTGTATCCTCTACAAACCTCTGGGGCAGGCCCACATTTCATTCATCTTTGCCATGGCCTACGCCCCTTGGTGCAGAGCCTCAGCCTTTATAATCAGATTACTAATGGCTAGTTTGCGTGCCAGACACCGAACTCTGAGTTTCAATGAGACTTTCAAAATTCTTGAGACAAACTTTATTCCCATTTAATCAAGAGGAAACAGAAGCTTACAGAGGTTAAGCCACTTGCTCAAGGCCACATGGTCATGAGTGGCAGAGCTGAGATTCAAAGACAAGATAGTGTGATCCATAGCTGGAACTTTCTGCATCTCCTCCAGGTACCCTGTTTAGCCGGTGTCGGGCAAATGTAGAGGCCAGAACAGCCTGGTCTCCCCACCCATCCCACGCCCTGCACAGTGTGGGGGTGCGTGCTCAGTCACTTTAGTAGTGTTCGACTCTTTGCGACCCCTTGGACTGCAGCCCACCAGGCTCTTCTGTCCATGGGCTTTTCCAGGCAAGAGTACTGGAGTGGGCTGCCATTTCCTTCTCCACTAAAACCACTTTCAGTTCATTTCAGTTGCTCAGTCGTGTCCGACTCTTTGCGACGCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACTCAGACTCATGCCCATCGAGTCAGTGATGCCATCCATCCATCTCATCCTCTGTCATCCCCTTCTCCTCCTGCCCCCAGTCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAGCTCTTCACATGAGATGGCCAAAGTACTGGAGTTTCAGCTTCAGCATCATTCCCTCCAAAGAAATCCCAGGGCTAATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCGCTCAGCCTTCTTCAAAGTCCAACGCTCACATCCATACATGACCACAGGAAAAACCATAACCTTGACTAGACGGACGTTTGTTGGCAAAGTAATGAATATGCTATCTAGGTTGGTCATAACTCTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCTATCACCATCTGCAGTGATTTTGGAGCCCAAAAAAATAAACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACTGGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCCACTTTTTCACTCTCCACTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCACAAGGGTGGTGTCATCTGCATATCTGACCACTTTAGTTACTTGTTAAACTTTTCTCTTCTCACAAGTCTTTCTGGAAGGGACTAACTCAGAGCTGAGCTCTGCGACTTCAGACATGGAGTGAAAGCCTCTGCAATACATGCTGTTCTAAAGAATAATTATATTTGAGTTGTACAAGTGCTGGCTTCAGAAGGGAACTTGTCTAATCTCCCAAGTGGCCAGGAATGCACGTTTGCTCCTCATGGTGTACATGTGTAACTGACTCAACGACTCACTTTTCTTTTGACTCAGCCGCAGGGCATGTGGGATCATAGTTCCCTGACTAGGCATTGAAACTTCATCCCCTGCCCTTCAACCACTGGACCACCAGGGAAGTCCCCCTTCCATGTTTTTTTTTTTTTTTTTTTTTAAAGAGTACGGTTGTTTCACATATTACAAGGGCTTCTATCTAGGCCACTATTTTTGTGTCCATTCCTGCAAAGGCGCCCACAACTGGTGGGAACTCATACCAGGCAAGGTTCTGACCATCACAGCGTTTGGGAGGGAGAGTCCACCCCCCCCCAGCCCGTCTCCACCTGGGAATGCTGCTCTTGTGCTCACCTCACCTGCGGCCAGAGGATCGTGACCATAGGGCTTCCAGGGGCACTTGTTCACCTGTGACCTTTTGGCCATTTGGGCTTGCTACTGCCAGCTCCATCCTTCTTCCATCACAGTACTTTGGCTGGGCTTCTATGCTCCGGGCCTTTCCTCCATTCCATGAATTTTTATTGATGCTAATGATGCTATCATCAGCACTACCAAGCTCTGGGAAAAGAGAGATGCTTAGACATCACCCTTCCTTGAGTTGCTCATAGACCATCAGGTTGCAAGACTCTTTTCCCTGGAGAGGTTGCTCTTACAAGACATAAGCACATCAAGCAGCATGAGAGACCAACAATCATATGAGTTTGCTGCTTCCTGAAAGGTGCAGTAGGAAATGGTGCTGTGGTTTGGGGAGCGGAGAGCCAAAGCGTGACGCAAGTGCTCCTGCACTGCCATGGCACCGACCCCGTGCTCCATAAGAACCTCTGGGGAGGTTCCTGCCCAGAGGTCAGAGAGCTGCCACGGCTATAAGTCTGGATCTCTGTTGCTTTGGGCTCCGGCAGCTTCAGACACCAAGCTGCAATAGCCACACGCATCCCCACAGCACAGGGAAATCGAATCCTGCCAGCCACCCCTCCCTCACAACTGCCTCCCTTGATTTCTCCCACCAAGAGTGAGACTGAAACAGAACAGCCCGAAGGGCCCCAAGCCAGGAAGACCAAACTCAACTTAGTCATGCAGCCGGGGTAGGGGTCATCCGGACACACCCATCCTTCCAAGAGCAGCAGCTCCCAGGAGGACCACCAGCCTTGTGGTCTGTATCCTGAGGCAAAGGAAAGGGGTGGTATGAAAGGAGGGGATCTTGCTGCGAAGTGTGTCCATCCCAGGTAACGGTAGCCATAGCGACAGGTACCTCCCATCTCTCTGAAGCTTTGGAAGCATTTTGCAGTCTTGCAGCATCACTTCAATCTCCTCCTAACCCAAACCAGCAATGAGATGCCCTTAGTGGATGACATTTGCCTGATTCTGCTCTCCTTCCTGCCCCTCCCAG
Seq C2 exon
GTGGATAACGACACCATTACCTACTCCAACTTCCTCAAAGCGACTGCTTCAAGAAGCATCATCAATAGGAAGAGGGACCTCCAAATTCACGTCAGCTGCAAGATGCTCCAGAACACCTGGGTTAACACGGTCTATGTTACTAATGACACCATAGACATTGAGAACACACAATACGGCAATTTTGACGTGAACATTTCCTTTTATACATCCTCTTCATTCCTGTATCCGGTGACCAGCAGCCCATACTATGTGGACCTAAACCAGAATTTGTACCTTCAGGCTGAAATCCTCCGTTCTAACCCTTCCCTAGCCTTATTTGTGGACACCTGTGTGGCATCACCAAATCCCAATGACTTTACATCTTTGACCTACGATCTCATCCAGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022715:ENSBTAT00000015890:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(23.7=95.2)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(51.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]