MmuINT0050168 @ mm10
Intron Retention
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:131112066-131116986:+
Coord C1 exon
chr7:131112066-131112250
Coord A exon
chr7:131112251-131116597
Coord C2 exon
chr7:131116598-131116986
Length
4347 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TATCTGCTTTCACCTACTAGGCT
3' ss Score
7.84
Exon sequences
Seq C1 exon
ATCTCCTTTGTCAGTCAAATCACATGCAAGCCAGCGTGAGCAGGAGCTACCTTCAGTCCATGGGCTATTCTGCCAGGGATCTTGTCATTCCTGGTTGGAACTCCAGCTACCACTGTCAGCCCCAGATAACACAGAGGGAGGTCATATTCACAATTCCCTACACAGGCTGTGGCACAATCAAACAG
Seq A exon
GTAAGCCTGGCACGGCCCACTCTATTTCCCACTGAGCATGCTTTCTTTAGTCAAAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTAGCATGCCTCTGCATGCATATGGAGGTCAAAAAGCAACCTATGGGAGTTGGGGTTTTCCTTCTACCATGTGGATCGTGGGACTAGAACTCAGATTGTTAGGCTTGGCAGCAAGTTCCTTTACCCACTGAGCCATCTTAGCAGCCCTGAGCATGACTTATCACAGTGATGGCTGCCACGCTTCTAGAACCCTGGAGATCTACAAGTTATGGCTGGGATGTAATCAGAACATCAGAATGGAGACTGAAGCCTCTGGTACAGTAGCTATAGCTACTTCTAAATAGGAGGAATGCAGAGGAAGAAAATGGGGAATTCCAGTAGTGTCCAGCAGAGGGAGCACTCAGCAGGCAGCCGCTCACACAGCTCCCAGAAGCTTGAGAGTTTTCAGAAGAAGAATTTTTCTTATGGTTTCATTTGGGATGTGTCAAAGAAGCAGAGGCCCCTAAACCAAAGATACAAATACACTTTACATAGCTAAGGTCTACAACAGCCATCAGCTGTTAAATGCGTTGTTATGCCTTTGAGGAAGCCAGTGCCCTGCTGAGACTCACACTCACTTAGTTGCCACAGTTGCCATTTCTTGAGTGATCAACAGGAGTGGTGGTGGTGGGGCAATGCTTTGACATCATACTATGACATTGTCGTCTACAAAATTCATAATGGAGTACTGAATATTGACTTACAAAAGCATGTACCCTGCTTGGCATTTTGAGTAGTGTGGCCCATGGGCCATCATGGTTTAGACAGGACTAGTAGAGTGGTCACCCATCTTGATTTGCTTGAGACTTGGTGATTTTAACATAGACTGCCCTGTTGTCATCCTGTCAGTGGAAGGCACTGTGCTGAGTCCATGTTCTACTTCCAAAATGTTATTTTATTATTTTATGTTTTGAAGCAAAGTTTCTCCATGCAGTTCTTGATGGTTATGTAGACCAGATTTGGCTTTGAACTCACAAAGATCTGCCTACCTTTGTCTCTTGAATCCTGGGATTAAAGACTCACAATACCATGTCTGGCTATGCCCAAATTCTTAACAAGTACTCTTGTATTGTCAGTCCCACTTTAGAAGTGAGGAAATTGAATGAAGAGAGATCAGGCCCATTGACCAAAGCCATGTAGACCAATAGGATAGGGCTGACACCACAAGTCAAGACTCTCAGAAACATCCTGCTAAGAAAAAGAAGCCAAACACAGAAGAGTTAGACAAAAATTCTATGTATATCACTATTAGATAGAAATGTGCCATTCATGCTAAATTTAGCAAAAGAGAATGACTGTGCAATAGGAAAAAGGGTTTCATGGGTGGCCTGCTTCTAGGTTAGCAGGATGGAGATGGTTGGGCAATGGAAAAGTGGTGTGTCTTACTATGGTGGTATGTACAGGACAGACAAGTTCAGATGCCTGTAATGCAGCAGATACGTGATAAGCATTTGCCATATGCCAGGAACTGTGTGGAGGGCTACAGGGCATTCCTTCCCGTTCCTCTGACACACAGTACACACTGAGAGAGGAACTGGGCACTCAGCCAATAAGGCGGGCCTTGGGTCATCCCTATGACTGTGATCCAGATCTCCTGGTGAGACTCTAAACACCCAGGAGTTCCTTCAGAACTTAGTGGGTGAGATGAGCTACTCACAGAGAAGAATGCGTATCAGCCAGGCACTGTGTGAAGGGCTACGGATTCCTTCCGCTTCCTCTGACACACAGCTGGGTTTGTTATTTTGCTCTTTAAGTTAAACATGTCACCTCCAGCCTTTGGTGAGTCGGCCACTGAAGGTGATTACTGCTCCTTTTTTCAAATGTGCAGCCCGGAGAATCAAGCATCTCAGAAGCTTGCTGGTGGCACTTCATAGATCACTGAGGGCATCTAACCAGCGTGCCAGCCCTGCCTGTTCTAACTGGAATGAGCCTGGGTAGCACTTGCTGCATTCTTGTCTCCCCACTTATGAAACAGCTGCAGAACCTATCAAACTGAGTGCTTCAGAGGCAGGGCTAATTTTATTTACCTTTGCCATCCTTGGTGTTCTGGTACAGAACCCAAGACTTTATGATAGTATCAACAACTATTATGTATGGCAGGGCACTGAACGGAGACTTCTACATGACTTATAAAAGTCTCAGGAAGCCTTTTATCCTCCCTTAATCACAGGAGATAAAAAAAATCTTAGAGAAACTGAGCCAAGTATCCAGGGACACATACTCAGGAACTGTGGAGTCAGTGTGCTCTGTAGCAGGCTATTTATGGCTTCGTCAGGCTGCCACACACTGGGAAGGTGATGTGTTGGCTGGTGTCACAGAATGGATGAGCTTTCTCACAGTGAAAGGCATGCCAGGACACTGAGAACCCAGGTCTCTCAGTAGATTCACACATAGGACTTTCTGTCACATTGGTTGTGTTTCTACCTAGGCAGATGCCTAAGAAGAATTTTAATCTAGAGTCATAATGGCCCCTTCCAGTCAAGAAATAAGTTTTCATTCTGTGCTTACTGTTTAGAGAAGATTCAGAACTGAGCTCTGTCACAGAGAGACATATATGGACTTCATGTGTAAACTCATGTTAAATATAATTTGAGAGACATATGTGGTTTGTAACACCATTGGTACCAAAATATGAATGGTTAAAAACTTTGAAGAATTCACAGAAGAAATACAGTATGCTTCCCCTGAGAACTTGGAAAGCAAAAGTTCTGTCTGTTGGTTCTTCTCCAGACCTGGGTCTGGAGTGCAGGCTCTGATGCCCTCTGTCGATCAGGCTGGCCATGCCCTAGGCTCTGGTCAGTCTGTGGAGGGAACGATCAGGCTAGAGAAGATAAAGGAAGAGTCAACAAAGTTACCCCCAAAGCTCTTGTCTTATGTTTAGATTACATTACATGCAGAGTAGAGTTCTCAACAATAGACAAGAAGTAGAAAGGTCTTTATCCTGGAAAAAAATTAATTATATGTAAGTTGCATGAGTGCACTGGCAACAAATGGGGCCTTGTCCAGGTCCCAACCAATTAGAACAGAGCTTCACCATTCACAGCTGGCATGACTAGAGTGGAAAACACTCTCTTCATCTGTCTCTGTTTCCCCCCTCCCCCATGTGTGTCTATCTGTCTGTCTCTGATCTGTCCTGCCCTGCCATACCTTTTTTTTTCCACTATGAAGAGTACAATTGCTTTAAATTCTGGATAGTGTCCACGCCACCCTTCTATTATTCTGCTCTTACAACATACAGGGCTCTAAGCATAAGGGACTGGGAGAAGTGGGTCACAGCACTCAGGCTGTGAAGAGCCCCACTGGTGCACTTGTGCTTACCTCTCTGGAGCCAGAGTCCCGACATGGTGCTTCCAGGAATTACTGTTCACGTGTGTCCTCTTGGCCACTGGGCTATACCTCCCTGCCACACCCTTTGTTTATCGTAGTACTCCCCAGACGCTCCCTTCATTCATGTCAACTGCTTCACAGACTCCTACAGATGCTACTGATGCTGCTGTTATACCAAGAAAAAAAAGAGAAAGAGACATTGTTGGACACCACCCTTTCCTTGAGATGCTCACAGGCCCCAGGCATAAGGCTATCAGCAAGGCTCAGAAGGTGGCAGATACAGTAAATGGCGCAAGACACCAGCCTCCTTAGGAGTTTGCCACCCAGTGGAAGTCACAGTGGTGAATCATTCCATAACACAATGACATAAGGCAGGCATGGGCTCAGGGTTGCTATGACCTCATTCAGATGTTCACAGAGGCTCTGGGGAAGTCTCAACCCCAGGGGTCAAGACCTGCTTCAGTTATAACTGCAAACTCCATGGCTTGAAAATTCCACCGTGCCAATCACCACACTGAGAAAGTCACCAGTCACTCAAAATAGAAAGCATCCTATGCTGGTACTACCAGGCCCCTCTCATAAGTATGAGACCAAGATTTTGAGAATGAATAAGCTCAGAATATGCTGCTCTGAGTCCTGAACCATGGAGTCTGAGCTTGGTCAGATACACTTCAGGTCAGGGGCCATCCAGAAACCCTAGATTTGTCACAAGCAAAAGCAACAAGTGTGGATTATCATGGCCTCTACCACCATGTGCCAGAGAATGTGGGAGAGTCGGGGAGAGTTTGCTGGCTAAGCTGATGCTATTACCATTCTAGGTAATAGCAGCCACAGTGCAGACAGGTGCCTTCTCTGTAGGATTCTGCAGGAGTCTGACTGTGTCATCTCCCTCTCTCTAACCAGCATCCCTGCTGACTCTATCTGCTTTCACCTACTAG
Seq C2 exon
GCTGACAACGAGACCATCAACTACTCCAACTTCCTCAGAGCGGTTGTTTCAAACGGCATCATCAAAAGGAGAAAGGACCTGAATATCCACGTCAGCTGCAAGATGCTGCAGAACACCTGGGTCAACACCATGTACATCACCAACAACACAGTGGAGATCCAGGAAGTTCAGTATGGCAATTTCGACGTAAACATTTCCTTCTACACATCCTCCTCCTTCTTGTTTCCAGTGACCAGCAGCCCATACTACGTGGATCTGGACCAGAATTTGTACCTTCAGGCCGAAATCCTCCATTCTGACGCCTCCTTGGCTCTGTTTGTGGACACCTGTGTGGCTTCGCCACATCCCAATGACTTCTCATCTTTGACATATGATCTCATCCGGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517:ENSMUST00000084509:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(23.7=95.2)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(51.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types