BtaINT0049821 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022715 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr26:42790642-42791562:+
Coord C1 exon
chr26:42790642-42790671
Coord A exon
chr26:42790672-42791215
Coord C2 exon
chr26:42791216-42791562
Length
544 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ACAGGAGGCTGACTTTTCCTGTC
3' ss Score
-14.08
Exon sequences
Seq C1 exon
CTACCGAGACCCAGACCACGGTTGTGCCAG
Seq A exon
GTGGGTCCTGCTGCCTTTTGACTCCAGGACGTCCCCTCCCCCACCATCACCCCCAGGATTCAAGCTTAAAAAAAAAAGATTCAAGCTACACTTTGTGTGTGAAAGTACCTGAATACGTACTGAGTGGAAAAGTCTTCAGAATAACCTTGGGCTGATGGAGTGGGTTCCCACATAGGGGTGAATGGCCGAACCTGGCACCCTGGTGGGAATGGGTAGCTAGTGTAAGTGGTCTCCAGCTGCAAAAGGTCATTCTATCCCAGAGGTCTGGGATGTAAGCTGTGGGCTTCCCACCTGCATCCTGAGACAGGATTCAGTGCCTGAATTGCTGAATTTGGGGATGCCATCAGAGAACCTGCAGAGCTAGTCCACAGCGCACAGTCAAGGCTTCTATCACACAGCCATCGGAGATAAAGAGTGAGGACCACGCTCAGTCCAGTCCTTATGGACTCACTGCCTAGACCTCAGCAGCCTTTCCCTGGAAGAAATCTGAATCTCAGGCCCCAGTGCCTTTTCCTTCAGGAGAAACAGGAGGCTGACTTTTCCT
Seq C2 exon
GTCTCCTTCTAGGAACCGAATCGGGTTTGGCCCTGAGGCTGGTCAATGGAGGTGACAGGTGTCAGGGCCGGGTGGAGGTCCTGTACCGAGGCTCCTGGGGCACCGTGTGTGACGACAGCTGGGACACCAACGACGCCAACGTGGTCTGCAGGCAGCTGGGCTGTGGCTCGGCCATTTCAGCCCCAGGAGGTGCCCGGTTCGGTCAGGGCTCAGGGCCCATTGTCCTGGACGACGTGGGCTGCTCAGGCTATGAGACCTACCTGTGGAGCTGCTCCCACAGCCCCTGGAACACACACAACTGTGGACACAGCGAGGACGCCAGCGTCATCTGCTCAGGTGGGTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022715:ENSBTAT00000015890:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=84.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCACGGTTGTGCCAG
R:
CACCTGAGCAGATGACGCTG
Band lengths:
358-902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]