DreINT0144182 @ danRer10
Intron Retention
Gene
ENSDARG00000096184 | si:dkey-21h14.14
Description
si:dkey-21h14.14 [Source:ZFIN;Acc:ZDB-GENE-110913-3]
Coordinates
chr4:11075769-11078418:-
Coord C1 exon
chr4:11078122-11078418
Coord A exon
chr4:11076084-11078121
Coord C2 exon
chr4:11075769-11076083
Length
2038 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TCTTTCTCTTTCATGCCTAGATT
3' ss Score
9.35
Exon sequences
Seq C1 exon
AAGTCAGGCTGGTTGGAGGTTCTCGCTGCTCTGGGAGGTTGGAGATCCTTCATAATCAGACATGGATGTCAGTGTGTGATGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTGACAAAGGAGACGCTCAGATGTGGACACAAGAGATTCACTGCAGAGGAGACGAGTCTCATATTGGATTATGTTCAACCACAAATGACACACAGTGCTCTCAAAAAAACTATGTAGAATTAAAATGTTCAG
Seq A exon
GTAAAAGATGACATCAAAAAATTATATTGTTAAAAATATTTCAAATCACAAGATAGCAGTGTTTTTATTAATGTCACATCTGTACAGTTGATGTGTATAAAAGTTAGTAATTTGATGGTTTGTTGTTTATACTTACAATGCAAAAACTCCTGTAAAGATAAAGGATTCAAATAGATTTTTATTTATAAATTAGCCATAGTTTCGAGAGGGGTCTGGATGCAGACTTGGTGCAGTTGTAATCGGAACTGCATGCAATCCTTTTTAATCCCCACAGCTATCTAACCTAAAACTAACTTAAGGAGCAATCAAATTTATATCCCAATAGTACCAAAACTCAAAATATGCCACACTTCAAAAACTCCTTATCTAGTCAAGAATTACAATCCTATTTCTAGCCCAGAATTATTATTTATCTTGTTTTAAAAGTACAATATATGCAAGATCAGAATGAGTAAGAGTTTTCTTTCTTATTTAGTAAAGCTTAAAGAGGAATTTTACCTGCAAATTTAGCTTAATTACAGCCAGGGACATAATTTAAGAGCAGCCTTGTATTTTTACAACATTATTTTTGCTGTAATAACTTGTTTTAAGGTTTTCCATTAAACAATCGCTCAATCACACTCAAACTTTAGTAACAAAGCACATCTTGTTATGTTTTGTTGAAGTAAGCTTCAGTATTTTGAAAAGCAACAAGTAATAATTTAGCATTTTGAGTATTGTCAAGTTAATTCGATTAACAAATTGTGGACAATGTGCAAATATGTGTGATCCTGATTTAATTCATACAATATTCTTCTTTAAAGTTTTAATGCTTTGGCTAGTTTTAAGACAAAATATATAATATTAATTCTTAATTTAAGACGATTTCTCCTGTTTATAACTCTAGTTTTAAGACCTTTTCACACAAAATAAGAAAACTCTAATGGTGGACGGCTGCTTCTCACTCAGCTGTTAACGCGAATGAGAGAGAGATTGTTCCCCCTCTGATGAGATGTACAAAGAGAGAATATCAATCAAAGTGTTTCTGCAGACTGTTTTTGTGAAGTGTGATTATAAAAATTATAATTAATTACAGCGGTATTAAACACCAATTTATCCAGCATATATTTTACACAGCGAATGCCCTTCCAGCTGCAACCTATCACAGGGAAACATCCATACACTGTCATTCACACACATAGATTGTGGACAATTTAGCTTACCCAATTTACCTGTACCGCATGTCTTTGGACTTGTGAGGGAAACCAGAGCACCCGGAGGAAACCCATGCGAACACAAGTAGAACATGCAAACGCCACACAGAAACACCAACTGACACAGCTGAGGCTCAAACCAGCAACCTTCTTGCTGTGAGGCGAACGTGCTACCCACTGCGTCACCGTATAATGAATTAAATCTTACCATTAGAGGCTGGCTGTACTCACACAATGTGGTTCTCACAACCAGGGATGGACTGGGACAAAAATTCAGCCCTGGCACTATAGCCACACCAGCCCACATTACCATACGTAGGCTACTGTTTGTTTGACATTCTTGCCAGATTTTGATTATGTCCGCCTAACCTTTGGTTGAGTCGGCCCCTCTCGAAACCATCACCGATTGGGCCAAATGCTTAACATTTACTATTATCATTATTACTATTATTACCATCACTAACGTCATCATAATATTCACATGTTGCACAAGATAAAAGCTGCCTGCATGTAAAAACGATACATATAAAAAATAATATTAAAATAAAAATAAAAAACTGACCGGCCCACATTTTAAAAATGGTCCGGCCCTTCTGGCATTTGCCAGAATTGCCAGATGGCCAGTCCGCCCCTGCTCACAACTGTGTTTAAAACCCTCATAAAAGTGATTTAGGTCATAAAAGGTCACCTTTGAGATACTTTGACTAAATACAATACTTCAAATAAGTGTTATAATCTTATTTTAAGACTGTAAAATTAAAATTACAACCCACAGCAAATCATTAAAAGCCTGTTTTCCCATGGACTAAGTAACACTGATTCATTTCTTTCTCTTTCATGCCTAG
Seq C2 exon
ATTTTGAACTGGTCAGGTTGGTTGATGGTGACAGTTCCTGCAGTGGTCGAGTGGAGGTTTATCATAGAGGTCAGTGGGGAACAGTGTGTGGTGATTACTGGGATATGACTGATGCTGCAGTGGTGTGTAGAGAACTGGGCTGTGGAGAACCTCTAGAAGCTGTGCGTTCTGCTTACTTTAGACAAGGTTCAGGTGAAATCTGGATGGATGATGTTTCCTGTAGTGGATCAGAGTCAACACTGAAGAGCTGTAGTTCAAGAGGATGGGGTGAACATGACTGTGGTCTTTTTAATGATGCTGGAGTCAGATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096184:ENSDART00000150566:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=97.0)
A:
NA
C2:
PF0053013=SRCR=WD(100=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]