MmuINT0050140 @ mm9
Intron Retention
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:138216365-138218037:+
Coord C1 exon
chr7:138216365-138216397
Coord A exon
chr7:138216398-138217713
Coord C2 exon
chr7:138217714-138218037
Length
1316 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
AAACCACCATGTCTTTCCAGGAA
3' ss Score
7.81
Exon sequences
Seq C1 exon
AGCAGACAACCGTTCCTGATTATACAACAATAG
Seq A exon
GTAAGAAAAGATTGTATAAATCTCGCACTGTAGGTCACAATGCTGATTGTATTCACAGCATTGACTTCCTTGTAACACTTAAGGGCATAGGGTGGTGGGTGTGTGCTGTGAAGACTTAGAGAAGTTGGGATGCCTCCTGATCCTGAGGACGTCCCTCCTTTCAACCCTGTCACTGTCTGTATTTCTCTGCCTGTGGAGGGGATCAGTCAGCCTGCTGTCCCTTGACCTTTCCCTCTCCCTGTGTGTGGAAGTCAGTATTGGTGTGGGTTCCAAAACTCCCCGGTCTCTACATTTAGTATTATGTCAGAAGAGACTCTGGGGTTAGAGTGATTAATATAAGACAACCTTCCAGAGAGGTTGGGTGACAAAATGAGACTGATGACTTTTAGGCGAGGCCATTCTGATTCACTTCAATTGGTTGCCCAGTTGAGAAAGCTGTGTCTTAGTGCATGCTGGGTGCAGACATTTGTCGTGTTTAAACATGCTGGGTTGAACCTTGACTTTAATGAAAAAATTCACATCAGTGGTCTTAGTGACCAGCAGTGACAAAGCTTGGGGTCCTCTATTATGGTCTCATTCCAGACAGAGTGTGAGGTGGTGGTGGCAGTCATGTCACCCGAGACATTGGGGTCCCAGCAGCTCCTTCAGATTTATAATTTTATGTTGGGTCTGAAAGGAGTTATGATACAAAACTGAAACTGGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGCAGCTGTTGAAAGCCTTTTTCCGGGACCCATGAACTTCTGTTGTGGCAGGAAGCTATCCTCTGCCCCTTTGGTGTCTCATATACCAACTTGCTATACATCGCCTTTACTGCTGGCAGATATGGGGCATGGTGGAGGTGAATGTGTGCATGTGCAGTGTGTGTGTGAGGAGTTGGGAGGGCTCTGCATCCTCTCTCTCCTTGAAACCCACTTAATCCTACAGTGCATGGTACTCCAAGGCATAATGGCAAGGTAGATTAGGTAGACAAGTTATCTTGTCACCAGCTAGGGCAGATTCAACCCATGCCAACACAGTGTGTAGAAACATAGGCATCCTGGTGACCAACTTGGTCCTCATGTCTAGAAAAGATGTAGTGACATTTTAGTGAGGGTTCACAGTCAAAGTGAGAGGGTACAGATTTTTACAGGACAGTGTGTCCAGGATGCAGCAGCAGGAGTTATTCATATCCCATATTGTTCATGAGTGAGTGGCCCACAAAGTGTATAAGCTTCATCACCCACAATGAACCAACAATGGAGAAACCACCATGTCTTTCCAG
Seq C2 exon
GAACAGAAAACAGTTTGGCCGTGAGGCTGGAGAATGGAGGAGACAGGTGTCAGGGTCGTGTGGAGATCCTTTACCAGGGTTCCTGGGGCACTGTGTGTGACGACAGCTGGGACCTCAATGATGCCAATGTGGTGTGCAGGCAGCTGGGCTGTGGCTTGGCCGTGTCTGCCCCAGGAAGTGCCAGGTTTGGACAGGGCACAGGGCCCATTGTCATGGATGACGTGGCCTGTGGAGGCTATGAGGACTATCTTTGGAGATGTTCCCACCGAGGCTGGCTCTCTCATAACTGTGGACACCATGAGGATGCTGGAGTCATCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517-Dmbt1:NM_007769:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=89.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGACAACCGTTCCTGATT
R:
TGACTCCAGCATCCTCATGGT
Band lengths:
348-1664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: