MmuINT0050145 @ mm9
Intron Retention
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:138224694-138226324:+
Coord C1 exon
chr7:138224694-138224726
Coord A exon
chr7:138224727-138226000
Coord C2 exon
chr7:138226001-138226324
Length
1274 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
AAACCACCATTTCTTCCCAGGAA
3' ss Score
6.15
Exon sequences
Seq C1 exon
AGCAGACAACCGTTCCTGATTATACACCAATAG
Seq A exon
GTAAGAAAAATTGTATAAATCTCGCACTGTAGGTCACAATGCTGATTGTATTCACAGCATCGACTTCCTTGTAACACTTAAGGGCATAGGGTGGTGGGTGTGTGCTGTGAAGACTTAGAGGAGTTGGGGATGCCTCCTGATCCTGAGGACTTCCCTCCTGTCAACCCTGTCACTGTCTGTATTTCTCTGCCTGTGGAGGGGATCAGTCAGCCTGCTGTCGCTTGACCTTTCCCTCTCCCTGTGTGTGGAAGTCAGTATTGGTGTGGGTTCCAAAACTCCCCGGTCTCTACATTTAGTATTATGTCAGAAGAGACTCTGGGGTTAGAGTGATTAATATAAGACAACCTTCCAGAGACGTTGGGTGACAAAATGAGACTGATGACCTCTTATGAGATGCCATTCTGATTCACTTCAAATGGGTGCCCAGTTGTGGAAGCTGTGTCTTAGTGCTCACTGGTGCAGATATTTGTCGTGTTTAAACATGTTGGGTTGAACCTTGACTTTAATGAGAAATTCACATCAGTGGTCTTAGTGACCAGCAGTGACAAAGCTTGGGGTCCTCTAGTGTGGTCTCATTGCAGACAGAGAGTGAGGTGGTAGAGGCATTCATGTGACCTGGGACAGCGGGGGGGGGGGGAGGGGAACCAGCAGCTCCCTCAGGTTTATAATTCTGCATTGAGCCTGAATGCAGTTCTGATATAAACTCTCCATCTTGTATATGTAAGCAGTTGTGAGAGCCTTTGCAAGGGACCATGAACTTTTGTTGTTGCATGAAGCTATCATTCTGCCCCTTTGGTTTTTCATAGACTAACCTACTCCGCCTTCTCCTTTACTGCTGGCAGGTGTGGTAAGGATGGAGGTGAATGTGCGCATGTGCAATGTGTGTGTGAGGAGTCGAGAGGGCTCTGCATCCCCTTCTCCTCAAAACACACTTGATTCTACAGTGCAGGACACTCCAAGGCCTTAGGTTCAAGGTAGAGTAGGTATCTTGTCACCATCCAGGGCAGATTCAACCCATGCCAACACAGTGTGTAGAAACCTAGGCATCCTGGTGACCAACTTGGTCCTCATGTCTAGGACAGAAGTAGTGACATTGTAGTGAGGGTTCACAGTCAAAGTGAGAGGGTACAGATCTTTACAGGACAGTGTGGCCAGGATGCAGCAGCAGGAGGTGTTCATATCCCATATTGTTCATGAGTGAGTGGCCCACAAAGTGTACAAAGCTCCATCACCCACAATGAACCAACAATGCAGAAACCACCATTTCTTCCCAG
Seq C2 exon
GAACAGAAAACAGTTTGGCCGTGAGGCTGGAGAATGGAGGAGACAGGTGTCAGGGTCGAGTGGAGATCCTTTACCAGGGATCCTGGGGCACTGTGTGTGACGACAGCTGGGACACCAAGGATGCCAACGTGGTGTGCAGACAGCTGGGCTGTGGCTGGGCCGTGTCTGCCCCAGGAAATGCCTACTTTGGACCGGGCTCTGGGTCTATTGTTCTGGATGACGTGGCCTGTACAGGACACGAGGACTATCTGTGGAGCTGCTCTCACCGAGGCTGGCTCTCTCATAACTGTGGACACCATGAGGATGCTGGAGTCATCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517-Dmbt1:NM_007769:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=89.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGACAACCGTTCCTGATT
R:
TGACTCCAGCATCCTCATGGT
Band lengths:
348-1622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: