BtaINT0049893 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53766770-53767198:-
Coord C1 exon
chr18:53767107-53767198
Coord A exon
chr18:53766854-53767106
Coord C2 exon
chr18:53766770-53766853
Length
253 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TACCCTGTTTGGGCCTTCAGGTG
3' ss Score
8.68
Exon sequences
Seq C1 exon
TGGAGCCCATCGCGGCGAGGCTTAAGGAGGTCCGGCTGCAGAGAGATGACTTCGAGATTTTGAAGGTGATCGGACGCGGGGCGTTCAGCGAG
Seq A exon
GTGAGCCTGGAGCAGCCAAGGCAGCTCAGTGGGGCTGGAACCTGCCTTTTCCTACAGTGGGAGGGGGACGTAGGAGACAGGCCTGAGAAAGTGATGAATGACTGAGTTTAGAGCCTAAGGCGAGGCTTGAGGCCAACGGGCGTGGCTTGTGGGGGCGGGGCCACTCCTGGGCCGGGTTACGGGCGGAGTCCTATCCCCGCGAGCCGGGTGTCTCCTGTCCACCTCCGCCCCGTTACCCTGTTTGGGCCTTCAG
Seq C2 exon
GTGGCGGTGGTGAAGATGAAGCAGACGGGCCAGGTGTATGCTATGAAGATCATGAATAAGTGGGACATGCTGAAGAGAGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347:ENSBTAT00000017759:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(4.8=41.9)
A:
NA
C2:
PF0006920=Pkinase=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCGGCGAGGCTTAAG
R:
CTCGCCTCTCTTCAGCATGTC
Band lengths:
169-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development