MmuINT0050320 @ mm9
Intron Retention
Gene
ENSMUSG00000030409 | Dmpk
Description
dystrophia myotonica-protein kinase [Source:MGI Symbol;Acc:MGI:94906]
Coordinates
chr7:19671335-19671764:+
Coord C1 exon
chr7:19671335-19671426
Coord A exon
chr7:19671427-19671680
Coord C2 exon
chr7:19671681-19671764
Length
254 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CATCTCGGTTCCGTATTTAGGTA
3' ss Score
10.29
Exon sequences
Seq C1 exon
TGGAGCCCATTGCAGCAAGGCTTAAGGAGGTCCGACTGCAGAGGGATGATTTTGAGATTTTGAAGGTGATCGGGCGTGGGGCGTTCAGCGAG
Seq A exon
GTGAGTCTTCAGTGGCCTGGGAATGGAACTTTACTTGATGTGGGTGGGGCATAACAGCTGGGGCAGAGCCTTAAAAATTGATGAATGAGCTTGAATTTAAGGCTGGAGGGGTGGGGGCGGAGCTTGTGGTCAGTGGGCGGTGTGCACGTGAGGGCGGGGCTAAGGTTGGGTGGAGATAAGGGTGGAGTCCTGTCTGGGTGAGCCTTGCTGGTTTTCCCTGCCACCTCTTGCTGTCATCTCGGTTCCGTATTTAG
Seq C2 exon
GTAGCGGTGGTGAAGATGAAACAGACGGGCCAAGTGTATGCCATGAAGATTATGAATAAGTGGGACATGCTGAAGAGAGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030409-Dmpk:NM_001190491:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(4.8=41.9)
A:
NA
C2:
PF0006920=Pkinase=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATTGCAGCAAGGCTTAA
R:
CTCGCCTCTCTTCAGCATGTC
Band lengths:
172-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: