DreINT0009056 @ danRer10
Intron Retention
Gene
ENSDARG00000074914 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr10:365619-365908:-
Coord C1 exon
chr10:365814-365908
Coord A exon
chr10:365703-365813
Coord C2 exon
chr10:365619-365702
Length
111 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
TAGTTTACTGTTAAACACAGGTG
3' ss Score
3.05
Exon sequences
Seq C1 exon
CAGCGGAGCCTCTGGTCAGACAGGTGAAGAAGACCCGAATCAGCAGAGAGGATTTCCACATCCTGAAGGTGATCGGCAGAGGGACGTTCAGCGAG
Seq A exon
GTCAGCTTTTACAGAAGTCTGCTGTTTACACTGAGTTTACACTGAAGTATTCATTTAGATGTTCAAGCGTAAAACAAGATGAAAGACTCAATAGTTTACTGTTAAACACAG
Seq C2 exon
GTGGCTCTGGCGCGCATGCGTAACACACAGCAGGTTTACGCTGTGAAGATCATGAATAAATGGGACATGCTGAAACGTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074914:ENSDART00000114487:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.6=40.6)
A:
NA
C2:
PF0006920=Pkinase=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTGGTCAGACAGGTGAA
R:
TCTCCACGTTTCAGCATGTCC
Band lengths:
171-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]