BtaINT0049896 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53765921-53766290:-
Coord C1 exon
chr18:53766142-53766290
Coord A exon
chr18:53766015-53766141
Coord C2 exon
chr18:53765921-53766014
Length
127 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TCCTTCTTCCCTCCGCACAGGGA
3' ss Score
9.64
Exon sequences
Seq C1 exon
TACCTTGTCATGGAGTACTACGTGGGCGGGGACCTGCTAACGCTGCTGAGCAAGTTTGGGGAGCGGATACCGGCCGAGATGGCGCGCTTCTACCTGGCCGAGATTGTCATGGCCATAGACTCGGTGCACCGGCTGGGCTACGTGCACAG
Seq A exon
GTGGGCGTTGCCGGGGCCCAGGGGCGCGGGAATCGGAGAGCTGTGATCCTTCAGAGGGTGGGGCCTGGTGAGACGACGAGAGAGAAGCTCGCGTATCCCCCTCCCCTTCCTTCTTCCCTCCGCACAG
Seq C2 exon
GGACATTAAGCCGGACAACATCCTGCTGGACCGCTGCGGCCACATCCGCTTGGCCGACTTCGGCTCCTGCCTCAAGTTGCGGGCGGATGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347:ENSBTAT00000017759:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.2=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTTGTCATGGAGTACTACGTG
R:
GTTCCATCCGCCCGCAAC
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development