RnoINT0048367 @ rn6
Intron Retention
Gene
ENSRNOG00000015085 | Dmpk
Description
DM1 protein kinase [Source:RGD Symbol;Acc:1309825]
Coordinates
chr1:79991985-79992425:+
Coord C1 exon
chr1:79991985-79992133
Coord A exon
chr1:79992134-79992331
Coord C2 exon
chr1:79992332-79992425
Length
198 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CCCTTTCTCTCTATGTACAGGGA
3' ss Score
9.83
Exon sequences
Seq C1 exon
TACCTGGTCATGGAATACTACGTGGGCGGGGACCTGCTAACGCTGCTGAGCAAGTTTGGGGAGCGGATCCCCGCCGAGATGGCGCGCTTCTACCTGGCCGAGATTGTCATGGCCATAGACTCGGTGCACCGGCTGGGCTACGTGCACAG
Seq A exon
GTGGGCGTGGCGGGGCCCTTGGAGGGTTAGCAGAGTTTGTGTGGGAAGGAAGGGTACCTGAAGGTCGGATCCCATTGGGGACAGGACCGGGGTCTAGAATTGTAGAATCCTGGTTGGGATGGAACCAGACCCAAACCTGGGGACCTAAGAGGGAAAATTTTCAAGAAAGCACACTTTCCCCTTTCTCTCTATGTACAG
Seq C2 exon
GGACATCAAACCAGATAACATTCTGCTGGACCGATGTGGGCACATTCGCCTGGCAGATTTTGGCTCCTGCCTCAAATTGCAGCCTGATGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015085:ENSRNOT00000020428:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.2=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGTCATGGAATACTACGTG
R:
CGTTCCATCAGGCTGCAATTTG
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]