BtaINT0050099 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49075037-49075959:-
Coord C1 exon
chr22:49075819-49075959
Coord A exon
chr22:49075201-49075818
Coord C2 exon
chr22:49075037-49075200
Length
618 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GGGTCCCCTGGCTCCTGCAGCTC
3' ss Score
6.95
Exon sequences
Seq C1 exon
ATGCTCAGGACTCAGTGGGTTCTGAACTGGCCTGGCCAGGTGACCATCGCCGGGTGTCAGACCTATTGGACCTTAGAGGTGGAAGAGGCTCTGGAGGCTGGCAACCTCAGCAGCCGGCTGTTCCCCCAGCTTGCCCGGCAG
Seq A exon
GTGAGACTCAAGGGTGTGGGGGTCACCATCTGCTCCCCACCAACAACCCACACCCTGAGGCAGCTCAGTCCCTCCAGGAGCTTTGTCATGTCTTGATCCTGGAAGAGGGCCTGGGGTTGGAACCAAAGAGTAGAGGGTCAGACACCCCTGAAACAAGTGTCTCATGACCAGCCACCAGTGGGAGGGATGGGGGCTCTAACGGGAGTGCTGAGGTCAGGCAGGTGCCCCTCTCCTGAAGGTCAGAGTGGGAGCCTCCTACCTGGAGCTGTCCTAGGCTGGCCCATGGCCTACCCTTGCCTTGTGCACTGGCTCCTCACCACACTGCTTCCTCAAGCTCCTCACCAGGCCCCTTCCTGACCCTGGGCACCGTGCACAGTGGGCAGATGGATGCATGTGTGTGCCTCCATTTTTATTGACATCCCTGCCAGACTTCCCATGTCACCAATGCCCTGCCTACCCTCCTCTGCCTGATCCCTGCACCCTGCCCATCCCAGACCATCAGAAGCCCCCAGAAGAGAGGGGTTGCTGCTGGCGGAAGCCCACCCCTGAGCAAGGCAGGGAAGGCCTGCCTGCAGCATGGCCCCACCCGTCCCTGACGGGGTCCCCTGGCTCCTGCAG
Seq C2 exon
CTCAGTGACCTGGTGGCACTGGTGCGGGGAAGTCTGTCCCGCATGCAGCGAGCTGTGCTGTCGGCGCTAATCGTCATCGAGGTCCACGCCAAGGATGTGGTGCACAAGCTGGTCCAGGAGAACGTGGTCAGCGTGCATGACTTCGAGTGGATCTCACAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCAGGACTCAGTGGGTT
R:
AGATCCACTCGAAGTCATGCAC
Band lengths:
295-913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]