DreINT0057975 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34435697-34436089:-
Coord C1 exon
chr11:34435988-34436089
Coord A exon
chr11:34435861-34435987
Coord C2 exon
chr11:34435697-34435860
Length
127 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTTTGTATATGCACAAACAGTTA
3' ss Score
4.48
Exon sequences
Seq C1 exon
GTTGTTATTGCTGGCTGTCAAACATTTTGGACCCAAGAAGTGTCAGAGTCTTTGAATAAGGGAGACTTGGCAGATCGGCTTTACCCACAGTTGCAGAAACAG
Seq A exon
GTACAGATTGTTTCCAACTGTGCAAACAATTAACCATTCCTGTTGGGGTTTTTACCTCTGCAATGCATTATTGTAACTATAAATATGAAACCATGTGGTCATTTTTGTTTTGTATATGCACAAACAG
Seq C2 exon
TTAGGAGATTTGGTGAAGCTGGTGCGGGGTCAGCTGTCAAAGATGCAACGGGCCATACTCTCAGCACTCATTGTCATTGAAGTACATGCTAAAGATGTGGCAGCCAAGCTGGTTGAGGAGGAAGTGTCCAGTGTCAATGACTTTGAGTGGATCAGCCAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTCAAACATTTTGGACCC
R:
GCTGGCTGATCCACTCAAAGT
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]