RnoINT0048579 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7379180-7379958:-
Coord C1 exon
chr16:7379818-7379958
Coord A exon
chr16:7379344-7379817
Coord C2 exon
chr16:7379180-7379343
Length
474 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
TGACTTCCTGATCCTTTCAGCTC
3' ss Score
8.12
Exon sequences
Seq C1 exon
ATGCTCAGAACTGAGTGGGTTCTGAGCTGGCCGGGCCAGGTGACCATTGCTGGTTGCCAGACATACTGGACATTGGAGGTAGCCCAGGCACTTGAGGCCAGCAGCATCAGTAGCAGCCTCTTCCCCCAGCTCTCCAAACAG
Seq A exon
GTAGAACTAAAAAGGATTGGTGCTTCCCCCACCCACCCAGTTCTCCTAGCAGCATTCTCCTGCATCAAGCCTGAAAGAGACCAGAGGTCAGGTCCCAGGAGCAGATCAGACTCTGTAGCACCAGCAAGAAGGGACCTAAGGAGGGCTCTGAGACGAGGCAGGTGCCCCTCCTTTAATGATTAGCGAAGCGGTCACCAGGTTCTTCCTGTCCCATCCCTTGGGCTCCCCACAGTCCATGCTTCTCGCCGCACTGCAGACTCTATTTCCAGCCACGAGCATGCAAACAGATTGTACACCACAGAGGCAGGTCCCACGTGTGTGACTCGTATGTTCTCCCGTCTTCCTCTACTCCCATCTCAGATCAGTAGAAGCCTCCAGAATGTAGACACTGTTCCTGGCAGAAGCCCTCCCTCTGTGCGAAGGGTGAGGAGCTATAGATCTCAGGTCTCTACAGTGACTTCCTGATCCTTTCAG
Seq C2 exon
CTCAGTGACCTGGTGGCCCTCGTGCGGGGGAAGTTGTCCCGCATGCAGCGGATGGTGCTGTCGGCACTCATCGTCATCGAGGTCCACGCCAAGGACGTGGTGAGCAAGCTGATTGACGAGAACGTGGTCAGCGTACATGACTTTGAGTGGATCTCACAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGTGGGTTCTGAGCTGG
R:
CTGAGCTGTGAGATCCACTC
Band lengths:
296-770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]