BtaINT0050100 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49074661-49075200:-
Coord C1 exon
chr22:49075037-49075200
Coord A exon
chr22:49074775-49075036
Coord C2 exon
chr22:49074661-49074774
Length
262 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCATCTCCCTGCAATGCCAGGTA
3' ss Score
5.68
Exon sequences
Seq C1 exon
CTCAGTGACCTGGTGGCACTGGTGCGGGGAAGTCTGTCCCGCATGCAGCGAGCTGTGCTGTCGGCGCTAATCGTCATCGAGGTCCACGCCAAGGATGTGGTGCACAAGCTGGTCCAGGAGAACGTGGTCAGCGTGCATGACTTCGAGTGGATCTCACAGCTGAG
Seq A exon
GTGAGGGGGCAGGCAGTGTGGCCACATCCATCCGCAGGCCAGAGCAGCAGCAGGAGTGGGCAGGGCAGGGTGGAGAGTCAGCTACAAGAGGCTGGAGCTGACCTCAATGCCCGGGGGAAGCCGGGTGTGCCACGATGCCCTCATTTCCCCAAAGAACCACCTCTCAAAAAAAAAAAAAAAGAACCACCTCTCCTCAACCATGTACCCTGCCCAGTGGCCCGTGGTCCACATGCCCTGGGAACCCATCTCCCTGCAATGCCAG
Seq C2 exon
GTACTACTGGATGAATAACAACCTGTACATCCGGGCTGTGAATGCCGAGTTCATCTACGGCTACGAGTACCTTGGCAACAGCGGTAGGCTGGTGATCACGCCCCTCACGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(46.3=48.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTGACCTGGTGGCACT
R:
TGAGGGGCGTGATCACCAG
Band lengths:
271-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]