GgaINT0019471 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2889772-2890514:+
Coord C1 exon
chr12:2889772-2889935
Coord A exon
chr12:2889936-2890400
Coord C2 exon
chr12:2890401-2890514
Length
465 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TCGTGTTCACTCATCACTAGATC
3' ss Score
5.9
Exon sequences
Seq C1 exon
CTGGCTGATTTGGTTGCTGTGGTCCGTGGCCAACTGTCTAAGATGCAACGAGCAGTGATGTCAGCTCTCATTGTGATTGAGGTCCATGCCAAGGATGTTGCAGCAAAGCTGATAGAGGAGAATGTGACGAGCGTGAATGATTTCGAGTGGATCTCCCAGCTCAG
Seq A exon
GTAGAGAGCTCAGCTGTTAAACCTCACCTGGCCTCCCTGGCCAGTCTTTATTCTCTTCCCCCAACAGCCATGTCTATGACAAATGGGAACAAGTGTTTGCATGATCTGTAAGCAGTATTTGTGAGGCACTTCTAACATCCCTGTGAGAAGTGGGATTCAAGTCTCCTATAGATGCCAGTTCTAAGGCATCTGAGACAGGCCTAGACACTTTAGCAGTATGGACTGTGCTATACCACAGTGTCTCAAATGCCTCAGTATAAAAGGGCTTGCTTCTGCTCAAGTAGGAACACAGTGCTTGATAGAACACCTCATTTCAGGTCCTGTGATGCTGTGTTACCTTATCTCTTCTCTAAAGGCAAATCATGACATGCAGGTCTCTGAACCCACAGGCTGTAATTCTGTGAGCTGATGTATTGTCTGCCAGAAGGTTTTTATCTTTCTGCTGTCGTGTTCACTCATCACTAG
Seq C2 exon
ATCCTACTGGACCAAGGGGGACCTGTACATCAGAGCAGTCAATGCTGAGTTTGTGTATGGCTATGAGTACCTTGGGAACAGCGGCCGTCTGGTTATCACACCCCTCACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(8.2=48.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGATTTGGTTGCTGTG
R:
CTGTCAGTGAGGGGTGTGATA
Band lengths:
278-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]