RnoINT0048580 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7378920-7379343:-
Coord C1 exon
chr16:7379180-7379343
Coord A exon
chr16:7379034-7379179
Coord C2 exon
chr16:7378920-7379033
Length
146 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCCCGTGGCCCCATGTCCAGGTA
3' ss Score
5.77
Exon sequences
Seq C1 exon
CTCAGTGACCTGGTGGCCCTCGTGCGGGGGAAGTTGTCCCGCATGCAGCGGATGGTGCTGTCGGCACTCATCGTCATCGAGGTCCACGCCAAGGACGTGGTGAGCAAGCTGATTGACGAGAACGTGGTCAGCGTACATGACTTTGAGTGGATCTCACAGCTCAG
Seq A exon
GTGAGGGCCAGGGTGGAAGAGGCTGGGGTTGTCCCTCCCACCAAGCAGAGACGAGACAGACATGGGTACTTTTGTGTCCTCGTGCTCCAGAAGAATCCCTTCTTTTAACTGTTCACCTGCCCTCTGGCCCGTGGCCCCATGTCCAG
Seq C2 exon
GTACTACTGGACAAATAACGACCTGTACATCCGTGCTGTGAATGCGGAGTTCATCTACGGCTACGAGTACCTCGGCAACAGTGGGAGGCTGGTGATCACACCCCTCACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(8.8=48.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTTGTCCCGCATGCAG
R:
TGTCAGTGAGGGGTGTGATCA
Band lengths:
249-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]