BtaINT0050103 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49114216-49114975:-
Coord C1 exon
chr22:49114801-49114975
Coord A exon
chr22:49114373-49114800
Coord C2 exon
chr22:49114216-49114372
Length
428 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
CCTCTGTCTCCCTCGGGCAGGAG
3' ss Score
9.04
Exon sequences
Seq C1 exon
TCAGAACCTTTGAGGTTTCTGAGGACTTCGAGGAGCGCCTGGAGCGCGAGCGCATCGGGTCCACCACCAAGCTGCTCACCCAGACTGACTTCCCGCTGCAGGCCTACGAGCCCAAAGTACAGGTGCCCTACATGGTGCTGCCGGGCCAGTGCCCCCGCAAGATTGAGATCGAGAG
Seq A exon
GTATGGCTGGGTCGGCGGTGGGAGGTGGCATCTGCCCACCGCAAGGGGTGACGGATGGTAGGCAGCTAGGTGACCATCCTCATGGCAGAGGTTACCTAGATGGGTCTGTGTTGCAAGTGTTCCAATCAGCTCTTCTAGCCCTTTGGTTTCTTAGTGGAAACACGTTGCTTTCCTTGCTGTGAAATCAAGGAGGGTGGCTCTTAAGTCAATGTGGTGGGACTGCAGGCAGGATGCAAGGGTATTTGGGGCCCTGGAGAGCGGCTCCAGCCATCACACCACTTCCTCATGGGTTCCAGAGAGCATAGGGCCCTGGAGGGGTCCCTGAGCCCCACCTTTACTGCCTCAACTCCATGGGCCCTTGCTGACACCCGAGGGGGCGACTCACCTGAGCTGAGATGTCATGAGCTCCCTCTGTCTCCCTCGGGCAG
Seq C2 exon
GAGGAAGCAGCTCTACCTGAGCCTGGACATCGAGCAGCTGCTGGCCAACGAGGGCATTGACTCCGACAAGCTCATGCCCAGGCACCCAGACCCCCACAACCCCCAGACTATTGAGCAGGGTCACGACCCGCTCTTCCCCATTTATCTCCCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=NA C2=0.415
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGAGGTTTCTGAGGACTTCG
R:
CTTCAGTGGGAGATAAATGGGGA
Band lengths:
326-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]