RnoINT0048603 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7399428-7400045:-
Coord C1 exon
chr16:7399871-7400045
Coord A exon
chr16:7399585-7399870
Coord C2 exon
chr16:7399428-7399584
Length
286 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
ACCCTCCCTGCTCTGGCTAGGAG
3' ss Score
7.73
Exon sequences
Seq C1 exon
CTGAATCGTTCGTCATTCCTGAGGACTTTCAGGAGCGTGTAGAGCAGCAGAGCATCGGGACTACCACGCGGCTGCTCACCCAGACTGACTTCCCTCTACAGTCCTATGAGCCCAAGGTGCAGGTCCCATTCCAGGTGCTGCCCGGACGTTGCCCTCGGAAGATTGAGATTGAGAG
Seq A exon
GTATGCTGGTACCCAAGGAGGTAGCATCTACCAGGCCTGAGGGGCGGGGCACTGCAGACCATGACTCGGCAAGCCCCACAGCAGGGCCTGTGAAAAAGTTCAAGCAACCCTCCTTTAATAGGAACACGTGGGTTCCCTCCCCGTGGAATTGGGAAGGTAGCAATTACGTCAATGAAGTGGTTCTCGCAGGGCAATACAGAAGTGGCACTTGGGGTCCTGGGTCTTTGCTGACATCCCTGAAGCTCCTCCATGAGCTTTCATCCCTAACCCTCCCTGCTCTGGCTAG
Seq C2 exon
GAGGAAACAGCAGTATCTACGCCTGGACATTGAGCAGCTGCTGGCCAATGAGGGCATTGACTCTAACAAGCTCATGCCCAGACACCCAGACCTGCAGCAACCACAAACCATCGAGCAGGGCCGTGACCCACTCTTTCCCATTTATCTCCCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.377
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGACTTTCAGGAGCGTG
R:
AATGGGAAAGAGTGGGTCACG
Band lengths:
299-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]