GgaINT0019448 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2865657-2866965:+
Coord C1 exon
chr12:2865657-2865831
Coord A exon
chr12:2865832-2866817
Coord C2 exon
chr12:2866818-2866965
Length
986 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCCTATCCAATTCCCAACAGGAG
3' ss Score
8.57
Exon sequences
Seq C1 exon
TCACCACTTTCAAGATGCCTGAGAATCCTGCGAGTGTCCTGGATGCACAAGTGATTGGACCAACCACTGAGCACCTCATCGAGTCAGACTTCCCTGAGCAGTCCTTTAAGCCCAAAGTGCAGATTGCCTTCCAAACACTCCCAGGGCAGTGCCCTCGGAGTATCGAAATAGAGAG
Seq A exon
GTGAGTGTAGCAGAAATGCTAAGTCACAGCTTGAAGCAGTGATGGAGCACCTGGTGGGAAGGCAGGGCCAAGCCAGGGGAGCTCAGGTGCATGCAATGTACCTGAGTGGCAGGAATGGGTGGAGCCAGGATCCACCCCTTCCCAGACCCCCTTTAAGGGTTGGCAGTGGAAGTGAGGGGATCTTGCTGGAGATCCCTGTGTACCTCATGCCTTCTGAATGTAAGCAGCTTTTTTTCCTTTATTTCTGTGCCCACAGCCATTGTATTTGAGCAAATACTCTGATAGAGCAAATTCTCAGCTATAAAGCAGTATTTTTCAACATGGTGACCACTGTTATCTATGCATTTTTGCCAGGACAGAATAAGAGCCTACATTGCTGTGCTTACAGCAGTCTGCGTGGCTGTCTGGAACATGGCTTGTATTTCACATTGCTGTCAGCACTGCTGAAATGCACCATCCACTGACTTGCTGTGCTGACATCCACTATTTGGCCTCCATAAACATTCAGCAAGTGTCAATGAATGTCTAAGGGTGCCATTTTTTCCACGTGGAGGCATTCAGTTGCACACTTTTGCTTCATACACCTTTCCATGTCAGATGCCATTCTGTCATGCTGCTCCTCTGCAGCCATTTGTCACACGACAACAGCATGTCGTGGAATACAGGTGGGAAGGTTCAACCTCTCCTGACATCCCACTAATGTCTGCAGCTGCTTTGGATTGAAACCAGGTGCTTTTCCATGTCACCTTAGCTCAGTGCACACAGCTAACTCAGGTAAGTTACTGTTGGCAATAGGAGCAGGCTGGCAATGGAGGCTCCTGCAATCCTGCTCTCTTGTGTTGGATTGTTAGATTTTAAAGCTCTGATGATCTCTTGTGCCTTCTGGGATCCCTGCAACATCCTGGTGTGAGGGTGTGCAGGGTTCTGGGTATGAAAGCCCTTCTGGCCATGTTAAATGGTCATTTCCCCTATCCAATTCCCAACAG
Seq C2 exon
GAGAAGACAGCTGTATCTCAGCTTGGATATCACTCAGCTCTTAGCCAGTGAGGGGATAGACTCCAATCAGCTGACACAAAGGCGCTACGATCCTGACAGCGAGTCAGCTATTGAGGAGAAGAAATATCCCATCCATCTCCCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.340
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCACTTTCAAGATGCCTGA
R:
CTTTAGTGGGAGATGGATGGGA
Band lengths:
323-1309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]