BtaINT0050113 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49066201-49066633:-
Coord C1 exon
chr22:49066475-49066633
Coord A exon
chr22:49066309-49066474
Coord C2 exon
chr22:49066201-49066308
Length
166 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGA
5' ss Score
5.13
3' ss Seq
TCTCCCCCGATCCCTCGCAGGTG
3' ss Score
9.73
Exon sequences
Seq C1 exon
GGCCTCAAGAAGATGCCGCCCGAGAAGCTGAGCCGCATCCCTGAGCTGATCGAGCCCTGGTTCATCTTCTCCCTCATCTGGAGTGTGGGTGCCACGGGGGACAGCACCAGCCGTAACAACTTCAGCCACTGGCTCAGGATCAAAATGAAGACGGAAAAC
Seq A exon
GTGAGAGGCAGCCGCCCCTGGGCTGGGCTCCAAGGGCTGGGACGTGTATGCTGAATGCTGGGTGTTGTGGGGCTGTCCCCCAGGCCCAGGGCCCCAGGGACAACAAGTAGCCACGTAAGCGACTGGGCCTCATCACCTGTTTTTTTTCTCCCCCGATCCCTCGCAG
Seq C2 exon
GTGGCCTTGCTCTTCCCAGAGGAGGGGCTGGTGTTTGATTATAGGCTGGAGGACGGTGGCATCAGCAGCACCAGTGATGACGACGACGAGGAGGAGGAGGGCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.306
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGATGCCGCCCGAGAAG
R:
CTCCTCGTCGTCGTCATCACT
Band lengths:
246-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]