RnoINT0048594 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7370399-7370876:-
Coord C1 exon
chr16:7370718-7370876
Coord A exon
chr16:7370630-7370717
Coord C2 exon
chr16:7370399-7370629
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GCCTCCCTTGGTCCTGACAGATA
3' ss Score
8.54
Exon sequences
Seq C1 exon
GGCCTCAAGAAGATACCGTCTGAAAAGCTGAGTCATATCCCAGAGCTGATAGAGCCCTGGTTCATCTTCTCCCTGGTCTGGAGTGTAGGCGCCACAGGAGACCACAGCAGTCGCCTCAACTTCAGCCAGTGGCTAAAGATAAAGATGGTGTTCGAACAG
Seq A exon
GTAAGAGGTGGAAGGGCGGGCCAGGTCCCCAGGACCGATGGCAGGCGGCCCGCCTGGCCTCACAGGCTGCCTCCCTTGGTCCTGACAG
Seq C2 exon
ATAAAACTAGCTTTCCCAGAAGAAGGGCTGGTGTACGATTACCGACTGGATGACGCAGGGATCAGCAGCACTGAGGATGACGATGAGGACGATGAGGAGAGCAAACAGGTGGCCACGGCGCTGCCCGCCCAGGAAGGAGGGATGGTGAAGCCCCCTGGGCTGTGGGATCTCCCCCCTCGGGATAGTGGCCACTTGGAGAAAGCCACGCTGACAGCCAGCAGGTCAGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.348
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGGTCTGGAGTGTAGG
R:
CATCGTCATCCTCAGTGCTGC
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]